LOCUS BC002945 1854 bp mRNA linear HUM 02-MAR-2004
DEFINITION Homo sapiens chromosome 9 open reading frame 86, mRNA (cDNA clone
MGC:10629 IMAGE:3954912), complete cds.
ACCESSION BC002945
VERSION BC002945.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1854)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1854)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002945.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: o Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13435142.
FEATURES Location/Qualifiers
source 1..1854
/db_xref="H-InvDB:HIT000031305"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10629 IMAGE:3954912"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1854
/gene="C9orf86"
/gene_synonym="bA216L13.9"
/gene_synonym="FLJ10101"
/gene_synonym="FLJ13045"
/gene_synonym="pp8875"
/db_xref="GeneID:55684"
CDS 168..1601
/gene="C9orf86"
/gene_synonym="bA216L13.9"
/gene_synonym="FLJ10101"
/gene_synonym="FLJ13045"
/gene_synonym="pp8875"
/codon_start=1
/product="C9orf86 protein"
/protein_id="AAH02945.2"
/db_xref="GeneID:55684"
/translation="MKIVIRGDRNTGKTALWHRLQGRPFVEEYIPTQEIQVTSIHWSY
KTTDDIVKVEVWDVVDKGKCKKRGDGLKMENDPQEAESEMALDAEFLDVYKNCNGVVM
MFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPG
SSYFRYAESSMKNSFGLKYLHKFFNIPFLQLQRETLLRQLETNQLDMDATLEELSVQQ
ETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPGTPQP
APQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISRPPPWGWRLRGALGRRGQ
WPPWGGGRACHCLGRHLPLYHRLCRCPVAAVCASELEEAGHWWSPGWALQVLGLQAQC
EPALQEGRGQLASARLGGHPGPLGAEPPVFLRDVTEAQEGPVRVCLQRLGRGRLAVGC
ALPRHLLALRAHLGPQHAYGSASGREP"
misc_feature 171..701
/gene="C9orf86"
/gene_synonym="bA216L13.9"
/gene_synonym="FLJ10101"
/gene_synonym="FLJ13045"
/gene_synonym="pp8875"
/note="Ras; Region: Ras family. Includes sub-families Ras,
Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif
with GTP_EFTU, arf and myosin_head. See pfam00009
pfam00025, pfam00063. The high cutoff is so high to avoid
overlaps with related families"
/db_xref="CDD:pfam00071"
BASE COUNT 380 a 575 c 588 g 311 t
ORIGIN
1 cgccggccgc gcccgggctg ggacgtccga gcgggaagat gttttccgcc ctgaagaagc
61 tggtggggtc ggaccaggcc ccgggccggg acaagaacat ccccgccggg ctgcagtcca
121 tgaaccaggc gttgcagagg cgcttcgcca agggggtgca gtacaacatg aagatagtga
181 tccggggaga caggaacacg ggcaagacag cgctgtggca ccgcctgcag ggccggccgt
241 tcgtggagga gtacatcccc acacaggaga tccaggtcac cagcatccac tggagctaca
301 agaccacgga tgacatcgtg aaggttgaag tctgggatgt agtagacaaa ggaaaatgca
361 aaaagcgagg cgacggctta aagatggaga acgaccccca ggaggcggag tctgaaatgg
421 ccctggatgc tgagttcctg gacgtgtaca agaactgcaa cggggtggtc atgatgttcg
481 acattaccaa gcagtggacc ttcaattaca ttctccggga gcttccaaaa gtgcccaccc
541 acgtgccagt gtgcgtgctg ggaaactacc gggacatggg cgagcaccga gtcatcctgc
601 cggacgacgt gcgtgacttc atcgacaacc tggacagacc tccaggttcc tcctacttcc
661 gctatgctga gtcttccatg aagaacagct tcggcctaaa gtaccttcat aagttcttca
721 atatcccatt tttgcagctt cagagggaga cgctgttgcg gcagctggag acgaaccagc
781 tggacatgga cgccacgctg gaggagctgt cggtgcagca ggagacggag gaccagaact
841 acggcatctt cctggagatg atggaggctc gcagccgtgg ccatgcgtcc ccactggcgg
901 ccaacgggca gagcccatcc ccgggctccc agtcaccagt ggtgcctgca ggcgctgtgt
961 ccacggggag ctccagcccc ggcacacccc agcccgcccc acagctgccc ctcaatgccg
1021 ccccaccatc ctctgtgccc cctgtaccac cctcagaggc cctgccccca cctgcgtgcc
1081 cctcagcccc cgccccacgg cgcagcatca tctctaggcc gccaccctgg gggtggcgac
1141 tacgaggagc tctaggccgg cgtgggcagt ggccgccctg gggcgggggg cgtgcctgtc
1201 actgcctggg gaggcatttg cctctgtacc atcgcctttg ccgctgcccc gtggctgccg
1261 tgtgcgcttc tgagctggaa gaggccgggc attggtggtc cccaggctgg gccctgcagg
1321 tgctgggcct tcaggcccag tgtgagcctg ctctgcaaga agggagggga cagctggctt
1381 cagccaggct cggtggacac cctggccctc tcggggcaga gccgccagtg tttctcaggg
1441 atgtgactga ggcccaggag ggacctgtga gggtctgttt acagaggctg ggcaggggcc
1501 gcttggctgt ggggtgtgcg ctgccccggc acctgcttgc cctccgcgct catctggggc
1561 cgcagcatgc ctatggttcc gcttccggcc gggagccctg aacacgggtg tgcagactca
1621 ccctaaaggg cggcccaggc cccacgctag aaggctggcg agaccgaagg cagcatgtga
1681 ggcctctcct gggagtgggg gttgtgtttc ccacagtggc ctcagctgcg cccccgctca
1741 ggtgagcccg aaggcaggag ccgggaggca ctcctcccaa acactccact cagaccataa
1801 agcactcctg tttcactctg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//