LOCUS BC002898 1122 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SET domain containing 4, mRNA (cDNA clone MGC:10287
IMAGE:3940849), complete cds.
ACCESSION BC002898
VERSION BC002898.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1122)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1122)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002898.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55953062.
FEATURES Location/Qualifiers
source 1..1122
/db_xref="H-InvDB:HIT000031274"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10287 IMAGE:3940849"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1122
/gene="SETD4"
/db_xref="GeneID:54093"
/db_xref="HGNC:HGNC:1258"
CDS 108..1031
/gene="SETD4"
/codon_start=1
/product="SET domain containing 4"
/protein_id="AAH02898.1"
/db_xref="GeneID:54093"
/db_xref="HGNC:HGNC:1258"
/translation="MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARK
FQDSNLAPACFPGTGRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKP
PPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAE
EQRAHVQEFFASSRDFFSSLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQREC
LSAEPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHD
NQRLFLEYGFVSVHNPHACVYVSRGWNQLCS"
BASE COUNT 318 a 243 c 262 g 299 t
ORIGIN
1 taacgggagc agagtcggcg ggattgagca tttccacaga aattacagtt ttgtcctttt
61 tgaaaaaata gaactgtatt tcagaaaaaa gaaactacag ttttagcatg cagaaaggaa
121 aagggagaac aagccggatc agaagacgaa aactctgcgg aagttctgaa tcaagaggag
181 tgaatgagag ccacaagtct gaatttatag agctgaggaa gtggctgaaa gctaggaagt
241 ttcaagattc aaacttagcg cctgcttgtt ttccaggtac aggaagaggg ctgatgagtc
301 aaacatccct gcaggaggga cagatgatta tttcgttgcc tgagagttgc ctgctcacca
361 cggacacagt gattcgaagc tacttagggg catacattac taagtggaag cctcctccat
421 ctcctctgct ggcgctgtgc acctttttag tttcagaaaa gcatgctggg caccgatctc
481 tttggaagcc ttacctggag attttaccca aggcgtatac ctgccctgtt tgtttggagc
541 cggaagtggt gaaccttctt cccaaatctt taaaagcaaa ggctgaagag cagagagccc
601 acgtgcagga gttctttgct tcctccagag actttttctc ttctctgcag cctctgtttg
661 cggaggctgt tgacagcatc ttcagctaca gtgccctgct gtgggcttgg tgcaccgtca
721 acaccagagc cgtgtacctg aggcccaggc agcgggaatg cctttctgca gagccggaca
781 cctgtgcact cgctccgtac ctggacctgc tgaatcatag cccacatgtc caggtaaaag
841 cagcgtttaa tgaagaaact cattcttacg aaattagaac gacttcacgt tggagaaagc
901 atgaagaggt attcatctgt tacggccctc acgataatca acggctgttc ctggaatacg
961 gatttgtttc tgtccataat cctcatgctt gtgtttatgt ctcaagaggt tggaatcaac
1021 tttgttctta acattaacac tatataattt ttttccccat ttggagatgt gtattttcag
1081 ttttaataaa aatatcaaaa ccttaaaaaa aaaaaaaaaa aa
//