LOCUS BC002818 1430 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synovial sarcoma, X breakpoint 2, mRNA (cDNA clone
MGC:3884 IMAGE:3636268), complete cds.
ACCESSION BC002818
VERSION BC002818.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1430)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1430)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002818.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: f Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28559016.
FEATURES Location/Qualifiers
source 1..1430
/db_xref="H-InvDB:HIT000031212_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3884 IMAGE:3636268"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1430
/gene="SSX2"
/gene_synonym="HD21"
/gene_synonym="HOM-MEL-40"
/gene_synonym="MGC15364"
/gene_synonym="MGC3884"
/db_xref="GeneID:6757"
/db_xref="HGNC:HGNC:11336"
/db_xref="MIM:300192"
CDS 71..742
/gene="SSX2"
/gene_synonym="HD21"
/gene_synonym="HOM-MEL-40"
/gene_synonym="MGC15364"
/gene_synonym="MGC3884"
/codon_start=1
/product="synovial sarcoma, X breakpoint 2"
/protein_id="AAH02818.1"
/db_xref="GeneID:6757"
/db_xref="HGNC:HGNC:11336"
/db_xref="MIM:300192"
/translation="MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASE
KIFYVYMKRKYEAMTKLGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFG
RLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREA
QEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCV
RENSW"
BASE COUNT 435 a 353 c 317 g 325 t
ORIGIN
1 ctcagagtac gcacggtctg attttctctt tggattcttc caaaatcaga gtcagactgc
61 tcccggtgcc atgaacggag acgacgcctt tgcaaggaga cccacggttg gtgctcaaat
121 accagagaag atccaaaagg ccttcgatga tattgccaaa tacttctcta aggaagagtg
181 ggaaaagatg aaagcctcgg agaaaatctt ctatgtgtat atgaagagaa agtatgaggc
241 tatgactaaa ctaggtttca aggccaccct cccacctttc atgtgtaata aacgggccga
301 agacttccag gggaatgatt tggataatga ccctaaccgt gggaatcagg ttgaacgtcc
361 tcagatgact ttcggcaggc tccagggaat ctccccgaag atcatgccca agaagccagc
421 agaggaagga aatgattcgg aggaagtgcc agaagcatct ggcccacaaa atgatgggaa
481 agagctgtgc cccccgggaa aaccaactac ctctgagaag attcacgaga gatctggaaa
541 tagggaggcc caagaaaagg aagagagacg cggaacagct catcggtgga gcagtcagaa
601 cacacacaac attggtcgat tcagtttgtc aacttctatg ggtgcagttc atggtacccc
661 caaaacaatt acacacaaca gggacccaaa aggggggaac atgcctggac ccacagactg
721 cgtgagagaa aacagctggt gatttatgaa gagatcagcg accctgagga agatgacgag
781 taactcccct cagggatacg acacatgccc atgatgagaa gcagaacgtg gtgacctttc
841 acgaacatgg gcatggctgc ggacccctcg tcatcaggtg catagcaagt gaaagcaagt
901 gttcacaaca gtgaaaagtt gagcgtcatt tttcttagtg tgccaagagt tcgatgttag
961 cgtttacgtt gtattttctt acactgtgtc attctgttag atactaacat tttcattgat
1021 gagcaagaca tacttaatgc atattttggt ttgtgtatcc atgcacctac cttagaaaac
1081 aagtattgtc ggttacctct gcatggaaca gcattaccct cctctctccc cagatgtgac
1141 tactgagggc agttctgagt gtttaatttc agattttttc ctctgcattt acacacacac
1201 gcacacaaac cacaccacac acacacacac acacacacac acacacacac acacacccac
1261 caagtaccag tataagcatc tgccatctgc ttttcccatt gccatgcgtc ctggtcaagc
1321 tcccctcact ctgtttcctg gtcagcatgt actcccctca tccgattccc ctgtagcagt
1381 cactgacagt taataaacct ttgcaaacgt tcaaaaaaaa aaaaaaaaaa
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