LOCUS BC002809 1579 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens down-regulator of transcription 1, TBP-binding
(negative cofactor 2), mRNA (cDNA clone MGC:4292 IMAGE:3634908),
complete cds.
ACCESSION BC002809
VERSION BC002809.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1579)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1579)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC002809.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: d Column: 6.
FEATURES Location/Qualifiers
source 1..1579
/db_xref="H-InvDB:HIT000031204"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4292 IMAGE:3634908"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1579
/gene="DR1"
/gene_synonym="NC2"
/gene_synonym="NC2-BETA"
/db_xref="GeneID:1810"
/db_xref="HGNC:HGNC:3017"
/db_xref="MIM:601482"
CDS 703..1233
/gene="DR1"
/gene_synonym="NC2"
/gene_synonym="NC2-BETA"
/codon_start=1
/product="down-regulator of transcription 1, TBP-binding
(negative cofactor 2)"
/protein_id="AAH02809.1"
/db_xref="GeneID:1810"
/db_xref="HGNC:HGNC:3017"
/db_xref="MIM:601482"
/translation="MASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCT
EFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRR
KASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASA
SNQAGSSQDEEDDDDI"
BASE COUNT 425 a 391 c 387 g 376 t
ORIGIN
1 ctggcatctg gagggaccac cgttgccgcg tcttcggctt ccacgatctg cgttcgggct
61 acgcggccac ggcggcagcc actgcgactc ccactgtgcc tggctctgtc catattagtt
121 cccaggcggc cgtcgccgtt ccagcagcgg cagcggcagc ggcagcggcg gacatgttgt
181 gaggcggcgg cgcgggtgtc tgaaggatgg tttggccgag gcggcggcaa cggctgctgg
241 cggcggcggc agcggcagcg gggcctcggg ctctatagag ccgagcccgc tgggtacccg
301 cccggtaccg cgacgaggcc agtgcccctg gatcttgcct ctgctccgac gccgttgggg
361 accagttagg cgacagcgcc cgcccctctg aggagacacg aaggtggttc cccagctgct
421 caaatttccg gaccaccgcg ctttcccctc ctcagcctgg gctgtgctct ctctagaatc
481 ctcgggcccc cactttcttc ccaaactcat cctaaatctc tcacacacgc gagtgttccc
541 agccctcaag ccagctgctc ctccgttcat tttctgcacc ctcttcgcaa agcacccccc
601 gggatcactc tccgagggcg actttttgag aaatctcggt ggagtagtgg accagagctg
661 gggagttttt aaaagccggg gcgcgagaaa caggaaggta ctatggcttc ctcgtctggc
721 aacgatgatg atctcactat ccccagagct gctatcaata aaatgatcaa agagactctt
781 cctaatgtcc gggtggccaa cgatgctcga gagctggtgg tgaactgctg cactgaattc
841 attcacctta tatcttctga agccaatgag atttgtaaca aatcggaaaa gaagaccatc
901 tcaccagagc atgtcataca agcactagaa agtttgggat ttggctctta catcagtgaa
961 gtaaaagaag tcttgcaaga gtgtaaaaca gtagcattaa aaagaagaaa ggccagttct
1021 cgtttggaaa accttggcat tcctgaagaa gagttattga gacagcaaca agaattattt
1081 gcaaaagcta gacagcaaca agcagaattg gcccaacagg aatggcttca aatgcagcaa
1141 gctgcccaac aagcccagct tgctgctgcc tcagccagtg catctaatca ggcgggatct
1201 tctcaggatg aagaagatga tgatgatatc tgaaattcac cagctgagtt tctatttctt
1261 ctataaatgt ttttccctgc acaacaaaaa cagtgaaaga aatgcttatc tgtaattttg
1321 tatgcatctt ggtggacttg tcattggtat tctagggatg tctgctatta agtttcatct
1381 attgtgtgct atacatgtaa aaactgtctc tttgaactat tgaaaattta aggttcagta
1441 taatatcaat tttgaatttt taatggtgtt tatgaaattt tagatagcag cgagtccttc
1501 gtttgatcaa taaacagtgt tacagataaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1561 aaaaaaaaaa aaaaaaaaa
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