LOCUS BC002773 1618 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens penta-EF-hand domain containing 1, mRNA (cDNA clone
MGC:3498 IMAGE:3615612), complete cds.
ACCESSION BC002773
VERSION BC002773.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1618)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1618)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC002773.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: d Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912581.
FEATURES Location/Qualifiers
source 1..1618
/db_xref="H-InvDB:HIT000031173"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3498 IMAGE:3615612"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1618
/gene="PEF1"
/gene_synonym="PEF1A"
/gene_synonym="PEFLIN"
/db_xref="GeneID:553115"
/db_xref="HGNC:HGNC:30009"
/db_xref="MIM:610033"
CDS 3..857
/gene="PEF1"
/gene_synonym="PEF1A"
/gene_synonym="PEFLIN"
/codon_start=1
/product="penta-EF-hand domain containing 1"
/protein_id="AAH02773.1"
/db_xref="GeneID:553115"
/db_xref="HGNC:HGNC:30009"
/db_xref="MIM:610033"
/translation="MASYPYRQGCPGAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGG
GYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQ
PGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMI
NMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLS
PQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV
TMTASRML"
BASE COUNT 361 a 461 c 423 g 373 t
ORIGIN
1 ccatggccag ctatccttac cggcagggct gcccaggagc tgcaggacaa gcaccaggag
61 cccctccggg tagctactac cctggacccc ccaatagtgg agggcagtat ggtagtgggc
121 taccccctgg tggtggttat gggggtcctg cccctggagg gccttatgga ccaccagctg
181 gtggagggcc ctatggacac cccaatcctg ggatgttccc ctctggaact ccaggaggac
241 catatggcgg tgcagctccc gggggcccct atggtcagcc acctccaagt tcctacggtg
301 cccagcagcc tgggctttat ggacagggtg gcgcccctcc caatgtggat cctgaggcct
361 actcctggtt ccagtcggtg gactcagatc acagtggcta tatctccatg aaggagctaa
421 agcaggccct ggtcaactgc aattggtctt cattcaatga tgagacctgc ctcatgatga
481 taaacatgtt tgacaagacc aagtcaggcc gcatcgatgt ctacggcttc tcagccctgt
541 ggaaattcat ccagcagtgg aagaacctct tccagcagta tgaccgggac cgctcgggct
601 ccattagcta cacagagctg cagcaagctc tgtcccaaat gggctacaac ctgagccccc
661 agttcaccca gcttctggtc tcccgctact gcccacgctc tgccaatcct gccatgcagc
721 ttgaccgctt catccaggtg tgcacccagc tgcaggtgct gacagaggcc ttccgggaga
781 aggacacagc tgtacaaggc aacattcggc tcagcttcga ggacttcgtc accatgacag
841 cttctcggat gctatgaccc aaccatctgt ggagagtgga gtgcaccagg gacctttcct
901 ggcttcttag agtgagagaa gtatgtggac atctcttctt ttcctgtccc tctagaagaa
961 cattctccct tgcttgatgc aacactgttc caaaagaggg tggagagtcc tgcatcatag
1021 ccaccaaata gtgaggaccg gggctgaggc cacacagata ggggcctgat ggaggagagg
1081 atagaagttg aatgtcctga tggccatgag cagttgagtg gcacagcctg gcaccaggag
1141 caggtccttg taatggagtt agtgtccagt cagctgagct ccaccctgat gccagtggtg
1201 agtgttcatc ggcctgttac cgttagtacc tgtgttccct caccaggcca tcctgtcaaa
1261 cgagcccatt ttctccaaag tggaatctga ccaagcatga gagagatctg tctatgggac
1321 cagtggcttg gattctgcca cacccataaa tccttgtgtg ttaacttcta gctgcctggg
1381 gctggccctg ctcagacaaa tctgctccct gggcatcttt ggccaggctt ctgccctctg
1441 cagctgggac ccctcacttg cctgccatgc tctgctcggc ttcagtctcc aggagacagt
1501 ggtcacctct ccctgccaat acttttttta atttgcattt tttttcattt ggggccaaaa
1561 gtccagtgaa attgtaagct tcaataaaag gatgaaactc aaaaaaaaaa aaaaaaaa
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