LOCUS BC002744 1727 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pleckstrin homology domain containing, family F (with
FYVE domain) member 1, mRNA (cDNA clone MGC:4090 IMAGE:3628796),
complete cds.
ACCESSION BC002744
VERSION BC002744.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1727)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1727)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC002744.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: k Column: 8.
FEATURES Location/Qualifiers
source 1..1727
/db_xref="H-InvDB:HIT000031149"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4090 IMAGE:3628796"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1727
/gene="PLEKHF1"
/gene_synonym="APPD"
/gene_synonym="MGC4090"
/gene_synonym="PHAFIN1"
/gene_synonym="ZFYVE15"
/db_xref="GeneID:79156"
/db_xref="HGNC:HGNC:20764"
CDS 57..896
/gene="PLEKHF1"
/gene_synonym="APPD"
/gene_synonym="MGC4090"
/gene_synonym="PHAFIN1"
/gene_synonym="ZFYVE15"
/codon_start=1
/product="pleckstrin homology domain containing, family F
(with FYVE domain) member 1"
/protein_id="AAH02744.1"
/db_xref="GeneID:79156"
/db_xref="HGNC:HGNC:20764"
/translation="MVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTK
ECRKKAKPRIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMI
KTAKKSFVVSAASATERQEWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMR
CTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQE
EAEEQGAGSPGQPAHLARPICGASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSA
FHS"
BASE COUNT 366 a 561 c 526 g 274 t
ORIGIN
1 ggtgtggact cgagggctgg gcgcggggcc ggcgcagaag ccgccagctg gagacgatgg
61 tggaccactt ggccaacacg gagatcaaca gccagcgcat cgcggcagtg gagagctgct
121 tcggggcctc ggggcagccg ctggcgctgc caggccgagt gctgctgggc gagggcgtgc
181 tgaccaaaga gtgccgcaag aaggccaagc cgcgcatctt cttcctcttt aacgacatcc
241 tggtgtatgg cagcatcgtg ctcaacaagc gcaagtaccg cagccagcac atcatccccc
301 tggaggaggt cacactggag ctgttgccgg agacgctgca ggccaagaac cgctggatga
361 tcaagacggc caagaagtcc tttgtggtgt cggccgcctc cgctacggag cgccaggaat
421 ggattagcca catcgaggag tgcgtgcggc ggcaactgag ggccacgggc cgcccgccca
481 gcacggagca cgcggcaccc tggatccccg acaaggccac ggacatctgc atgcgctgca
541 cgcagacgcg cttctctgcc ctcacgaggc gccaccactg ccgcaagtgc ggcttcgtgg
601 tctgcgctga gtgctcgcgc cagcgcttcc tgctcccgcg cctgtccccc aagcccgtgc
661 gcgtctgcag cctctgctac cgcgaactgg ccgcccagca gcggcaggag gaggcggagg
721 agcagggcgc ggggtcccca gggcagccag cccacctggc ccggcccatc tgcggagcgt
781 ccagtggaga tgacgatgac tccgacgagg acaaggaggg cagcagggac ggcgactggc
841 ccagcagcgt ggagttctac gcctcggggg tggcctggtc tgccttccac agctgacccc
901 cggcctgcag aacatctgtc cccaagccag ctccactgcc caggccccca agagggcagc
961 tccagaagct gcccagggct ccgggacccc atcccatggt ggcaggtgca gcggtgggga
1021 gtggctcttt ctggactccc agtgcctttt tgctggacac tgtgtcctta tggcttcact
1081 gcaggtaatg cctttccctt caggaagccc cagaacaccc acaggtcttg gtaacaaacg
1141 ccaccttaca ctctgcaggc tgcagcggca gctccagatg gcctcctgag ctggacgacc
1201 ccaggtctcc agacatctag ggaccagagc aggtttggga acacagaggg aagacaggat
1261 gggagtgtag ccacagaacc cacctgcacc ctgacaggca caccccactg aagagcctga
1321 gtcccaggag gcctcctgga agcccaggac tgcccaccca ccacgctggt gcccaccgcc
1381 tggccagcca agccctgccg atcagacatg tgggctcccc gaagcccagc cagagactgc
1441 cgtgctgtgg gtgccaccag gcccagggac tgcagcctga gctccccgag gcccagggca
1501 gccgggtgag gactctgtcc tgtgtcacct ctctccaggt gtccagctgt ctcatgcctt
1561 tttgtcctgt cctcagctct ccgtgtggtc agcgaaacca ttgttttctg ttaggactca
1621 gttgcaagaa cagaaaccct gcccccactt aataataaaa aagaaagttt attgatgggt
1681 ggttgcaaaa caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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