LOCUS BC002705 1388 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens rhomboid domain containing 3, mRNA (cDNA clone
MGC:3580 IMAGE:3627843), complete cds.
ACCESSION BC002705
VERSION BC002705.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1388)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1388)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 31, 2003 this sequence version replaced BC002705.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: a Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11072100.
FEATURES Location/Qualifiers
source 1..1388
/db_xref="H-InvDB:HIT000031114"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3580 IMAGE:3627843"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1388
/gene="RHBDD3"
/gene_synonym="HS984G1A"
/gene_synonym="PTAG"
/db_xref="GeneID:25807"
/db_xref="HGNC:HGNC:1308"
CDS 24..1184
/gene="RHBDD3"
/gene_synonym="HS984G1A"
/gene_synonym="PTAG"
/codon_start=1
/product="rhomboid domain containing 3"
/protein_id="AAH02705.1"
/db_xref="GeneID:25807"
/db_xref="HGNC:HGNC:1308"
/translation="MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELL
LDPWQVHRLLTHALGHTALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGL
LAVLLAGLGLSSAAGSCGYMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLS
SEPPFLQLLCGLLAGLAYAAGAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPG
SLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLD
WAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLER
MGFPTEQAVVALAATGRVEGAVSLLVGGQVGTETLVTHGKGGPAHSEGPGPP"
BASE COUNT 209 a 465 c 455 g 259 t
ORIGIN
1 ccttgaccgt cctcaaccaa gcgatgcatg ccaggggccc ccatggccaa ctgtccccag
61 cactgcctct ggcctcctca gtcctgatgc tgctgatgag caccctgtgg ctggtggggg
121 ccggccccgg cctggtcctg gccccggagc tgttgctgga cccctggcag gtgcaccggc
181 tgctgaccca tgccctgggc cacacggccc tgccaggcct gctcctgagc ctgctgctcc
241 tgcccactgt gggctggcag caggagtgcc acctgggcac gctgagattc ctgcatgcct
301 cagccctgct cgccctggct tctgggctgc tggcagtgct gctggcaggc cttgggctgt
361 ccagtgcagc cggcagctgt ggatacatgc ctgtccacct ggccatgctg gctggggagg
421 gacaccgccc tagacggccc cgtggggcac tgccaccgtg gctgtcgccg tggctgctgc
481 ttgccctgac cccactgctc agctctgagc cacccttcct gcagctcctt tgcggcctcc
541 ttgccggcct ggcctatgca gctggggcct tccggtggct ggaaccctca gagcgacggc
601 tgcaggtgct gcaggagggc gtcttgtgca ggaccttggc ggggtgctgg cccctgaggc
661 tccttgccac cccgggtagc ctggcggagc tgcctgtcac ccatcctgcc ggagtgaggc
721 ctcccatccc tggaccgcct tatgtggcct cccctgacct ctggtcccac tgggaagact
781 cagccctgcc cccaccaagc ctgaggcctg tgcagcccac ctgggagggc tcctcagagg
841 caggcctgga ctgggctggg gccagcttct ccccagggac tccgatgtgg gcggccttgg
901 atgagcagat gctgcaggag ggcatccagg cctcgcttct tgacgggcca gcccaggaac
961 cccagagcgc accatggctg tccaagtcct ctgtctcctc tctgcggctg cagcagctgg
1021 agcgcatggg cttccctacg gagcaggcgg tggtggcact ggcagccaca ggccgtgtgg
1081 agggtgccgt gtcactgttg gttggaggac aagtgggcac tgagaccctg gtgacccatg
1141 gaaagggtgg gcctgcccac tccgagggtc ctgggcctcc ctagcccagg cagagagtgg
1201 ggcacaggca ggcccttggg tgctaagggc tgggctgcat gtgggtagcc cgagctccta
1261 ctctgtctaa agagggccac agtggggagc aggggcacct ctggaggcag gagaggcccc
1321 ccagcatgct gccctagtac gtgtttagaa taaaaaccag tttgtttttc aaaaaaaaaa
1381 aaaaaaaa
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