LOCUS BC002645 1802 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens syntaxin 5, mRNA (cDNA clone MGC:3648 IMAGE:3605858),
complete cds.
ACCESSION BC002645
VERSION BC002645.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1802)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1802)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543665.
FEATURES Location/Qualifiers
source 1..1802
/db_xref="H-InvDB:HIT000031062"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3648 IMAGE:3605858"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1802
/gene="STX5"
/gene_synonym="SED5"
/db_xref="GeneID:6811"
/db_xref="HGNC:HGNC:11440"
/db_xref="MIM:603189"
CDS 270..1073
/gene="STX5"
/gene_synonym="SED5"
/codon_start=1
/product="STX5 protein"
/protein_id="AAH02645.1"
/db_xref="GeneID:6811"
/db_xref="HGNC:HGNC:11440"
/db_xref="MIM:603189"
/translation="MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVRQRSEFTLMA
KRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDF
VRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRA
PVSALPLAPNHLGGGAVVLGAESHASKDVAIDMMDSRTSQQLQLIDEQDSYIQSRADT
MQNIESTIVELGSIFQQLAHMVKEQEETIQSVLLFPLLPALSPGSTRTC"
BASE COUNT 416 a 526 c 468 g 392 t
ORIGIN
1 cgggtttcgg cggcttcagt gctcggggag gaggcagtga cggccggtga gattggaagt
61 ggcggcggcg gcaggcggca gaggggagtc cgaggttatg cgtctcaatg atcccgcgga
121 aacgctacgg gtctaagaac acggatcagg gtgtctacct gggtctctca aagacacagg
181 tcctgtcccc tgcaactgct ggcagtagca gcagcgacat cgcccctctg ccccccccag
241 tgaccctcgt ccctccccct cccgacacca tgtcctgccg ggatcggacc caggagtttc
301 tgtctgcctg caagtcgctg cagacccgtc agaatggaat ccagacaaat aagccagctt
361 tgcgtgctgt ccgacaacgc agtgaattca ccctcatggc caagcgcatt gggaaagacc
421 ttagcaacac atttgccaag ctggagaagc tgacaatctt ggcaaagcgc aagtccctct
481 ttgatgataa agcagtggaa attgaagagc taacatatat catcaaacag gacatcaata
541 gcctcaacaa acaaattgct cagctccagg atttcgtgag agccaagggc agccagagtg
601 gccggcacct gcagacccac tccaacacca ttgtggtctc cttgcagtcg aaactggctt
661 ctatgtccaa tgacttcaaa tcggttttag aagtgaggac agagaacctg aagcagcaga
721 ggagccggag agagcagttc tcccgggcac ctgtgtcagc cctgcccctt gcccctaacc
781 acctgggcgg tggtgctgtg gttctggggg cagagtccca tgcctccaag gatgtcgcca
841 tcgacatgat ggactctcgg accagccagc agctgcagct cattgacgag caggattcct
901 acatccagag tcgggcagac accatgcaga acattgagtc gacaattgtt gagttgggct
961 ccatctttca gcagttggca cacatggtta aggaacagga ggaaaccatt cagagtgtcc
1021 ttttgtttcc tcttctcccg gccttgtccc caggatcgac gagaacgtgc taggagccca
1081 gctggacgtt gaggccgccc attcagagat cctcaagtac ttccagtctg tcacctccaa
1141 ccggtggctc atggtcaaaa tcttcctcat cctcattgtc ttcttcatca tctttgtggt
1201 cttccttgct tgaaccctct ctactctgag gcactctgtt ggggtttggg accctcctgg
1261 gaaggcaagt ggccagtgct gccactgagc ctgtgcaggg tacttgggag aaaggccctg
1321 tttccctgga actgctaaga atgaccactg cccctgatcc cccacccctt gcctctggcc
1381 accctgtcct ccccccacca ccctcaggcc tatgaaacac acagggttct agatttgaac
1441 tctgctgtga agtgactgga agggagcaga ggccagctgg gggccagtgg gggaggttgt
1501 ttccactagg agatttttat aaaccctctc cagcctctcc caaaggaagc gttggcagca
1561 aagggagatg atgcccttac ccaccttcct gtgagtgaag agaggaagca gccccaggga
1621 ccaattttcc caattgacct ctttcttcct ctttcaccat gtgaggcagg gagccctgag
1681 cccttcagct gcctgcacaa cccctgacat tggctgctgg tgactcaatc tgccaaatgt
1741 gctgcagctc gttttctccc aattacagca agactgtcag cctcaaaaaa aaaaaaaaaa
1801 aa
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