LOCUS BC002636 1938 bp mRNA linear HUM 12-JUN-2008
DEFINITION Homo sapiens zinc finger and SCAN domain containing 5A, mRNA (cDNA
clone MGC:4161 IMAGE:3606994), complete cds.
ACCESSION BC002636
VERSION BC002636.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: c Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13236531.
FEATURES Location/Qualifiers
source 1..1938
/db_xref="H-InvDB:HIT000031054"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4161 IMAGE:3606994"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1938
/gene="ZSCAN5A"
/db_xref="GeneID:79149"
/db_xref="HGNC:HGNC:23710"
CDS 167..1657
/gene="ZSCAN5A"
/codon_start=1
/product="zinc finger and SCAN domain containing 5A"
/protein_id="AAH02636.1"
/db_xref="GeneID:79149"
/db_xref="HGNC:HGNC:23710"
/translation="MAANCTSSWSLGESCNRPGLELPRSMASSETQLGNHDVDPEISH
VNFRMFSCPKESDPIQALRKLTELCHLWLRPDLHTKEQILDMLVMEQFMISMPQELQV
LVMMNGVQSCKDLEDLLRNNRRPKKWSVVTFHGKEYIVQDSDIEMAEAPSSVRDDLKD
VSSQRASSVNQMRPGEGQAHRELQILPRVPALSRRQGEDFLLHKSIDVTGDPKSLRPK
QTLEKDLKENREENPGLTSPEPQLPKSPTDLVRAKEGKDPPKIASVENVDADTPSACV
VEREASTHSGNRGDALNLSSPKRSKPDASSISQEEPQGEATPVGNRESPGQAGMNSIH
SPGPASPVSHPDGQEAKALPPFACDVCEKRFTCNSKLVIHKRSHTGERLFQCNLCGKR
FMQLISLQFHQRTHTGERPYTCDVCQKQFTQKSYLKCHKRSHTGEKPFECKDCKKVFT
YRGSLKEHQRIHSGEKPYKCSKCPRAFSRLKLLRRHQKTHPEATSQ"
BASE COUNT 563 a 481 c 488 g 406 t
ORIGIN
1 cccagaccga gaaggtcgga ggcagaagcc gggaaggaga cttctgaatg aacagtgaat
61 ctattactga ggaaaaccag aggaagcctg tgtagatagg tatcaattag ataccagcta
121 ctggaagagc tttctcagag actgattaaa aaattctcca ctagatatgg ctgcaaattg
181 cacatcctca tggagtctag gagaatcctg caacagacct gggttggagc tgccacggtc
241 tatggcatcc tcagaaactc aacttggaaa tcacgacgtg gaccctgaga tttctcacgt
301 gaacttcagg atgttcagct gcccgaagga gtcggacccc atccaggctc tgaggaaact
361 cactgagctg tgccatctgt ggctgaggcc cgacctccac accaaagagc agatcctgga
421 catgctggtg atggagcagt tcatgatctc catgccccag gagctccagg tcttagtcat
481 gatgaacggt gtgcagagct gcaaagacct ggaggacctg ctacgaaata acagaagacc
541 caagaaatgg tctgtggtca ccttccacgg aaaggaatat attgtgcagg actcagatat
601 cgagatggct gaagccccct ccagtgtcag agatgatctg aaagacgtgt ccagccaacg
661 ggcctcctcg gtgaaccaga tgcgtccagg ggaaggccag gcccaccgag agctgcagat
721 cctgcccagg gtccctgcat tgtccaggag gcagggagag gactttctgc tacacaagag
781 tattgacgta acaggtgacc caaagtctct gagacccaag cagaccttgg agaaggatct
841 gaaggaaaac agggaagaga acccaggact gacatcccca gagcctcagc ttccaaagag
901 tcccacagat ctggtgagag caaaggaggg gaaggacccc ccaaaaatag cctctgtgga
961 aaatgtggat gctgacacac cttctgcctg cgttgtggag agagaagctt cgactcacag
1021 cgggaacaga ggagacgctc tgaatctgag cagtcccaaa agaagcaaac cagatgcctc
1081 ctccatttcc caagaagagc ctcaaggaga agccacacct gtgggcaaca gagaatcccc
1141 gggacaagct gggatgaatt caattcattc cccaggccct gcgagcccag tcagtcaccc
1201 ggatggccaa gaagccaagg cactgccgcc ctttgcatgt gacgtgtgcg agaagaggtt
1261 tacgtgtaat tccaagctag tcatccacaa gagatcacac acaggcgaga gactctttca
1321 atgtaatctc tgtgggaagc gcttcatgca gcttattagc ctccaatttc accagcgaac
1381 ccacactggc gagaggccct acacgtgtga cgtctgccag aagcagttca cccagaagtc
1441 ctacttgaag tgtcacaaga gaagccacac aggggagaag cccttcgaat gtaaagactg
1501 caagaaagtt ttcacctaca gggggagcct gaaggagcac cagcgcatcc actccggaga
1561 gaaaccctac aaatgttcca agtgtccaag agccttcagt cggctgaaat tgttaagacg
1621 ccaccagaaa acacatccag aagctacttc tcagtgattg cataatccgg tctatgcctt
1681 ctgcaccaag aagaagtgaa tgatattttt catcaatgtt atcagatgac atttgacaca
1741 tgcaagggcg tctgacacac agagggagtg ccctagatat gaattgccag gatgtttgag
1801 taaatatgtg tcctccccac tgagctttgt tttctgtttc attatgtcca ttgttttctt
1861 ataggtttat tttggtttgt gttgctgttc ttccaataaa cgatcatctt attagttttc
1921 aaaaaaaaaa aaaaaaaa
//