LOCUS BC002628 1689 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3, mRNA (cDNA clone
MGC:3653 IMAGE:3608512), complete cds.
ACCESSION BC002628
VERSION BC002628.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1689)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1689)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002628.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: a Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51477703.
FEATURES Location/Qualifiers
source 1..1689
/db_xref="H-InvDB:HIT000031046"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3653 IMAGE:3608512"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1689
/gene="SMARCD3"
/gene_synonym="BAF60C"
/gene_synonym="CRACD3"
/gene_synonym="Rsc6p"
/db_xref="GeneID:6604"
/db_xref="HGNC:HGNC:11108"
/db_xref="MIM:601737"
CDS 130..1542
/gene="SMARCD3"
/gene_synonym="BAF60C"
/gene_synonym="CRACD3"
/gene_synonym="Rsc6p"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 3"
/protein_id="AAH02628.1"
/db_xref="GeneID:6604"
/db_xref="HGNC:HGNC:11108"
/db_xref="MIM:601737"
/translation="MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVR
PGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIREL
VPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAE
DSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPT
TQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQ
YVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISV
DPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQ
RDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYF
YCKIQQRRQELEQSLVVRNT"
BASE COUNT 384 a 533 c 475 g 297 t
ORIGIN
1 ctggcatctt cctcccctcc tcctttccag atcctcagaa tggcccttgg tgctgcaggc
61 gcggtgggct ccgggcccag gcaccgaggg ggcactggat gactctccag gtgcaggacc
121 ctgccatcta tgactccagg tcttcagcac ccacccaccg tggtacagcg ccccgggatg
181 ccgtctggag cccggatgcc ccaccagggg gcgcccatgg gccccccggg ctccccgtac
241 atgggcagcc ccgccgtgcg acccggcctg gcccccgcgg gcatggagcc cgcccgcaag
301 cgagcagcgc ccccgcccgg gcagagccag gcacagagcc agggccagcc ggtgcccacc
361 gcccccgcgc ggagccgcag tgccaagagg aggaagatgg ctgacaaaat cctccctcaa
421 aggattcggg agctggtccc cgagtcccag gcttacatgg acctcttggc atttgagagg
481 aaactggatc aaaccatcat gcggaagcgg gtggacatcc aggaggctct gaagaggccc
541 atgaagcaaa agcggaagct gcgactctat atctccaaca cttttaaccc tgcgaagcct
601 gatgctgagg attccgacgg cagcattgcc tcctgggagc tacgggtgga ggggaagctc
661 ctggatgatc ccagcaaaca gaagcggaag ttctcttctt tcttcaagag tttggtcatc
721 gagctggaca aagatcttta tggccctgac aaccacctcg ttgagtggca tcggacaccc
781 acgacccagg agacggacgg cttccaggtg aaacggcctg gggacctgag tgtgcgctgc
841 acgctgctcc tcatgctgga ctaccagcct ccccagttca aactggatcc ccgcctagcc
901 cggctgctgg ggctgcacac acagagccgc tcagccattg tccaggccct gtggcagtat
961 gtgaagacca acaggctgca ggactcccat gacaaggaat acatcaatgg ggacaagtat
1021 ttccagcaga tttttgattg tccccggctg aagttttctg agattcccca gcgcctcaca
1081 gccctgctat tgccccctga cccaattgtc atcaaccatg tcatcagcgt ggacccttca
1141 gaccagaaga agacggcgtg ctatgacatt gacgtggagg tggaggagcc attaaagggg
1201 cagatgagca gcttcctcct atccacggcc aaccagcagg agatcagtgc tctggacagt
1261 aagatccatg agacgattga gtccataaac cagctcaaga tccagaggga cttcatgcta
1321 agcttctcca gagaccccaa aggctatgtc caagacctgc tccgctccca gagccgggac
1381 ctcaaggtga tgacagatgt agccggcaac cctgaagagg agcgccgggc tgagttctac
1441 caccagccct ggtcccagga ggccgtcagt cgctacttct actgcaagat ccagcagcgc
1501 aggcaggagc tggagcagtc gctggttgtg cgcaacacct aggagcccaa aaataagcag
1561 cacgacggaa ctttcagccg tgtcccgggc cccagcattt tgccccgggc tccagcatca
1621 ctcctctgcc accttggggt gtggggctgg attaaaagtc attcatctga caaaaaaaaa
1681 aaaaaaaaa
//