LOCUS BC002524 1987 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:765
IMAGE:3140610), complete cds.
ACCESSION BC002524
VERSION BC002524.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1987)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1987)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: g Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23238249.
FEATURES Location/Qualifiers
source 1..1987
/db_xref="H-InvDB:HIT000030963"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:765 IMAGE:3140610"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1987
/gene="SNX17"
/gene_synonym="KIAA0064"
/db_xref="GeneID:9784"
/db_xref="HGNC:HGNC:14979"
/db_xref="MIM:605963"
CDS 110..1522
/gene="SNX17"
/gene_synonym="KIAA0064"
/codon_start=1
/product="sorting nexin 17"
/protein_id="AAH02524.1"
/db_xref="GeneID:9784"
/db_xref="HGNC:HGNC:14979"
/db_xref="MIM:605963"
/translation="MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLH
EQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFL
RRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYF
SLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENR
VGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDA
CVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGST
SSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSI
RKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPSTD
ASASDVHGNFAFEGIGDEDL"
BASE COUNT 464 a 516 c 567 g 440 t
ORIGIN
1 caaaatggcg agtgaggctg cggggactcg ctgagcagcg gagggggagc gtgcagagcc
61 gctgcggccc tcacagtccg gagcccggcc gtgccgtgcc gtagggaaca tgcacttttc
121 cattcccgaa accgagtccc gcagcgggga cagcggcggc tccgcctacg tggcctataa
181 cattcacgtg aatggagtcc tgcactgtcg ggtgcgctac agccagctcc tggggctgca
241 cgagcagctt cggaaggagt atggggccaa tgtgcttcct gcattccccc caaagaagct
301 tttctctctg actcctgctg aggtagaaca gaggagagag cagttagaga agtacatgca
361 agctgttcgg caagacccat tgcttgggag cagcgagact ttcaacagtt tcctgcgtcg
421 ggcacaacag gagacacagc aggtccccac agaggaagtg tccttggaag tgctgctcag
481 caacgggcag aaagttctgg tcaacgtgct aacttcagat cagactgagg atgtcctgga
541 ggctgtagct gcaaagctgg atcttccaga tgacttgatt ggatacttta gtctattctt
601 agttcgagaa aaagaggatg gagccttttc ttttgtacgg aagttgcaag agtttgagct
661 gccttatgtg tctgtcacca gccttcggag tcaagagtat aagattgtgc taaggaagag
721 ttattgggac tctgcctatg atgacgatgt catggagaac cgggttggcc tgaacctgct
781 ttatgctcag acggtatcag atattgagcg tgggtggatc ttggtcacca aggaacagca
841 ccggcaactc aaatctctgc aagagaaagt ctccaagaag gagttcctga gactggccca
901 gacgctgcgg cactatggct acttgcgctt tgatgcctgt gtggctgact tcccagaaaa
961 ggactgtcct gtggtggtga gcgcgggcaa cagtgagctc agcctgcagc tccgcctgcc
1021 tggccagcaa ctccgagaag gctccttccg ggtcacccgc atgcgatgct ggcgggtcac
1081 ctcctctgta ccattgccca gtggaagcac gagcagccca ggccggggcc ggggtgaggt
1141 gcgcctggaa ctggcttttg aatacctcat gagcaaggac cggctacagt gggtcaccat
1201 cactagcccc caggctatca tgatgagcat ctgcttgcag tccatggttg atgaactgat
1261 ggtgaagaaa tctggcggca gtatcaggaa gatgctgcgc cggcgggtgg ggggtactct
1321 gagacgctca gacagccagc aagcagtgaa gtccccacca ctgcttgagt cacctgatgc
1381 cacccgggag tctatggtca aactctcaag taagctgagt gccgtgagct tgcggggaat
1441 tggcagtccc agcacagatg ccagtgccag tgatgtccac ggcaatttcg ccttcgaggg
1501 cattggagat gaggatctgt aatctccact gcttggatgt ctgccctcta ccccagagga
1561 atttacagaa acttgccctg tgcctgtgtc ccccatgcta ggggcggagg ggtcttttcc
1621 ttcttctttc ctacctaccc cttttctctt ggccaggggc ctcgtatcct acctttcctt
1681 gtcccctggg ctggctgcac agaggattgc cccttctctt ttcagagctg gccctcgatg
1741 ccaaattagc atttagtatt ttgcacaaag tctaagggac catggctgcc tgccttgggg
1801 aggaaccata tctccctctg ggccgcttct ggcctcttgg agccatgggc caaaggccaa
1861 ggggatgggc agaggtctgt gtttggtctg gcccagttcc ccatcattaa actcagcctg
1921 actgctgcct aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaa
//