LOCUS BC002523 2220 bp mRNA linear HUM 19-JUN-2006 DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 6, mRNA (cDNA clone MGC:2332 IMAGE:3140265), complete cds. ACCESSION BC002523 VERSION BC002523.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2220) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2220) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002523.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 4 Row: e Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 34328901. FEATURES Location/Qualifiers source 1..2220 /db_xref="H-InvDB:HIT000030962" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:2332 IMAGE:3140265" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2220 /gene="PTPN6" /gene_synonym="HCP" /gene_synonym="HCPH" /gene_synonym="HPTP1C" /gene_synonym="PTP-1C" /gene_synonym="SH-PTP1" /gene_synonym="SHP-1" /gene_synonym="SHP-1L" /gene_synonym="SHP1" /db_xref="GeneID:5777" /db_xref="HGNC:HGNC:9658" /db_xref="MIM:176883" CDS 136..1929 /gene="PTPN6" /gene_synonym="HCP" /gene_synonym="HCPH" /gene_synonym="HPTP1C" /gene_synonym="PTP-1C" /gene_synonym="SH-PTP1" /gene_synonym="SHP-1" /gene_synonym="SHP-1L" /gene_synonym="SHP1" /codon_start=1 /product="protein tyrosine phosphatase, non-receptor type 6" /protein_id="AAH02523.1" /db_xref="GeneID:5777" /db_xref="HGNC:HGNC:9658" /db_xref="MIM:176883" /translation="MLSRGWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLS VRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPL NCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGP GSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYAT RVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKN RYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATV NDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEY KLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGP IIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYK FIYVAIAQFIETTKKKLEVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVY ENLHTKNKREEKVKKQRSADKEKSKGSLKRK" BASE COUNT 572 a 620 c 638 g 390 t ORIGIN 1 caggatcgag gaggaagtgg ctgattactg agcggttctt cctcacctgg cttgggccac 61 tgtgcacagc tgtgccgctg gctcagcccc gccccctgcg gccctccgcc gtggcttccc 121 cctccctaca gagagatgct gtcccgtggg tggtttcacc gagacctcag tgggctggat 181 gcagagaccc tgctcaaggg ccgaggtgtc cacggtagct tcctggctcg gcccagtcgc 241 aagaaccagg gtgacttctc gctctccgtc agggtggggg atcaggtgac ccatattcgg 301 atccagaact caggggattt ctatgacctg tatggagggg agaagtttgc gactctgaca 361 gagctggtgg agtactacac tcagcagcag ggtgtcctgc aggaccgcga cggcaccatc 421 atccacctca agtacccgct gaactgctcc gatcccacta gtgagaggtg gtaccatggc 481 cacatgtctg gcgggcaggc agagacgctg ctgcaggcca agggcgagcc ctggacgttt 541 cttgtgcgtg agagcctcag ccagcctgga gacttcgtgc tttctgtgct cagtgaccag 601 cccaaggctg gcccaggctc cccgctcagg gtcacccaca tcaaggtcat gtgcgagggt 661 ggacgctaca cagtgggtgg tttggagacc ttcgacagcc tcacggacct ggtggagcat 721 ttcaagaaga cggggattga ggaggcctca ggcgcctttg tctacctgcg gcagccgtac 781 tatgccacga gggtgaatgc ggctgacatt gagaaccgag tgttggaact gaacaagaag 841 caggagtccg aggatacagc caaggctggc ttctgggagg agtttgagag tttgcagaag 901 caggaggtga agaacttgca ccagcgtctg gaagggcagc ggccagagaa caagggcaag 961 aaccgctaca agaacattct cccctttgac cacagccgag tgatcctgca gggacgggac 1021 agtaacatcc ccgggtccga ctacatcaat gccaactaca tcaagaacca gctgctaggc 1081 cctgatgaga acgctaagac ctacatcgcc agccagggct gtctggaggc cacggtcaat 1141 gacttctggc agatggcgtg gcaggagaac agccgtgtca tcgtcatgac cacccgagag 1201 gtggagaaag gccggaacaa atgcgtccca tactggcccg aggtgggcat gcagcgtgct 1261 tatgggccct actctgtgac caactgcggg gagcatgaca caaccgaata caaactccgt 1321 accttacagg tctccccgct ggacaatgga gacctgattc gggagatctg gcattaccag 1381 tacctgagct ggcccgacca tggggtcccc agtgagcctg ggggtgtcct cagcttcctg 1441 gaccagatca accagcggca ggaaagtctg cctcacgcag ggcccatcat cgtgcactgc 1501 agcgccggca tcggccgcac aggcaccatc attgtcatcg acatgctcat ggagaacatc 1561 tccaccaagg gcctggactg tgacattgac atccagaaga ccatccagat ggtgcgggcg 1621 cagcgctcgg gcatggtgca gacggaggcg cagtacaagt tcatctacgt ggccatcgcc 1681 cagttcattg aaaccactaa gaagaagctg gaggtcctgc agtcgcagaa gggccaggag 1741 tcggagtacg ggaacatcac ctatccccca gccatgaaga atgcccatgc caaggcctcc 1801 cgcacctcgt ccaaacacaa ggaggatgtg tatgagaacc tgcacactaa gaacaagagg 1861 gaggagaaag tgaagaagca gcggtcagca gacaaggaga agagcaaggg ttccctcaag 1921 aggaagtgag cggtgctgtc ctcaggtggc catgcctcag ccctgaccct gtggaagcat 1981 ttcgcgatgg acagactcac aacctgaacc taggagtgcc ccattctttt gtaatttaaa 2041 tggctgcatc ccccccacct ctccctgacc ctgtatatag cccagccagg ccccaggcag 2101 ggccaaccct tctcctcttg taaataaagc cctgggatca ctgtgaaaaa aaaaaaaaaa 2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //