LOCUS BC002492 2112 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:1066 IMAGE:3051390), complete cds.
ACCESSION BC002492
VERSION BC002492.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2112)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2112)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC002492.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: c Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542702.
FEATURES Location/Qualifiers
source 1..2112
/db_xref="H-InvDB:HIT000030938"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1066 IMAGE:3051390"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2112
/gene="TRMT1"
/gene_synonym="FLJ20244"
/db_xref="GeneID:55621"
/db_xref="HGNC:HGNC:25980"
CDS 81..2060
/gene="TRMT1"
/gene_synonym="FLJ20244"
/codon_start=1
/product="TRM1 tRNA methyltransferase 1 homolog (S.
cerevisiae)"
/protein_id="AAH02492.1"
/db_xref="GeneID:55621"
/db_xref="HGNC:HGNC:25980"
/translation="MQGSSLWLSLTFRSARVLSRARFFEWQSPGLPNTAAMENGTGPY
GEERPREVQETTVTEGAAKIAFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGI
QIKVPGEKDTQKVVVDLSEQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGL
AASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLMY
QHQRVSERFDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSK
YGAMALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAK
VKASASKQALVFQCVGCGAFHLQRLGKASGVPSGRAKFSAACGPPVTPECEHCGQRHQ
LGGPMWAEPIHDLDFVGRVLEAVSANPGRFHTSERIRGVLSVITEELPDVPLYYTLDQ
LSSTIHCNTPSLLQLRSALLHADFRVSLSHACKNAVKTDAPASALWDIMRCWEKECPV
KRERLSETSPAFRILSVEPRLQANFTIREDANPSSRQRGLKRFQANPEANWGPRPRAR
PGGKAADEAMEERRRLLQNKRKEPPEDVAQRAARLKTFPCKRFKEGTCQRGDQCCYSH
SPPTPRVSADAAPDCPETSNQTPPGPGAAAGPGID"
BASE COUNT 444 a 648 c 640 g 380 t
ORIGIN
1 atgcggctct ctgaccctct ctgtgccctc ccccgccccc cgaaccaggc ttggcgggcg
61 gaggcgccag cggatgtctc atgcaaggat cgtctctgtg gctaagcctc actttccgct
121 ccgcccgggt gctctctaga gcccggtttt tcgagtggca gtctccaggg ctgccgaata
181 cagcagcgat ggagaacggc accgggccct acggagaaga acgtccacgt gaagtccagg
241 agacgacagt caccgagggg gctgccaaaa tcgcctttcc cagtgccaac gaggtctttt
301 ataacccggt gcaggaattc aatcgggacc tgacatgtgc tgtgatcacc gagtttgctc
361 gcattcagct tggggccaaa ggaatccaga tcaaggttcc aggagagaag gacacgcaaa
421 aagtggtcgt ggacttgtca gagcaagagg aggaaaaggt tgaactgaaa gagagtgaaa
481 acctggcctc aggagaccaa cctcgcacag cggccgtggg ggagatctgt gaggaaggcc
541 tgcatgtgct ggaaggcctg gcagcttcag gcctacgttc cattcgattt gccctagagg
601 tgcctgggct cagatctgtg gttgcaaacg atgcctccac ccgggctgtg gatctcatac
661 gccggaatgt ccagctcaat gacgtggccc acctggtaca gccgagccaa gcagatgccc
721 ggatgctgat gtaccagcac cagagggtgt cggagaggtt tgacgtcatc gatctggacc
781 cctatggcag cccagccacc ttcctggatg cagctgtgca ggctgtgagt gaaggagggt
841 tgctgtgtgt gacctgcaca gacatggcgg tgttggcggg gaacagcggg gagacgtgct
901 acagcaagta cggggccatg gccctcaaga gccgggcctg ccacgagatg gccctgagaa
961 tcgtcctgca cagcctggac ctccgcgcca actgctacca gcgcttcgtg gtgccgctgc
1021 tcagcatcag cgctgacttc tacgtgcgtg tttttgtccg tgtcttcacc ggccaggcca
1081 aggtcaaggc ctcagccagc aagcaggcgc tggtgttcca gtgtgtgggc tgcggggcct
1141 tccaccttca gcgtctcggc aaagcgtcag gagtccccag cggccgggcc aagttctctg
1201 cagcctgtgg tccccctgtg acccccgagt gtgaacactg tgggcaacga caccagcttg
1261 gtggccccat gtgggcagag cccatccatg acctggattt tgtgggccgt gtcctggagg
1321 ctgtgagcgc taaccccggc cgcttccaca cctcggagcg gatccgaggg gtcctgagcg
1381 tcatcactga ggagctcccg gacgtgcctc tgtactacac cctggaccag ctgagcagca
1441 ccatccactg caacacacca agcctcctgc agttgcggtc ggccctcctc cacgctgact
1501 tccgggtctc actctcccac gcctgtaaga acgctgtgaa gacggatgcc cctgcctctg
1561 ccctctggga catcatgcgt tgctgggaga aggaatgtcc ggtgaaacgg gagcgactat
1621 cagagactag cccagcgttc cgcattctca gtgtggagcc caggctgcag gccaacttca
1681 ccatccggga agatgccaac cccagctccc gacagcgagg actcaagcgc ttccaggcta
1741 acccggaggc caactggggt ccccggcctc gtgcccggcc agggggcaag gcggccgacg
1801 aagctatgga ggagagacgc aggctgcttc agaacaagcg gaaggagccg ccggaagatg
1861 tggcccagcg ggctgcccgg ctcaagacat ttccttgcaa gaggtttaag gagggcacct
1921 gtcaacgcgg ggaccagtgc tgctactccc acagcccccc gacacccagg gtttctgctg
1981 atgctgcccc tgactgtcca gagacctcca accagacccc ccctggacct ggggctgccg
2041 ctgggccagg catagactga accaataaag agatgtcacg tcaccttcaa aaaaaaaaaa
2101 aaaaaaaaaa aa
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