LOCUS       BC002463                1540 bp    mRNA    linear   HUM 04-OCT-2003
DEFINITION  Homo sapiens major histocompatibility complex, class I, C, mRNA
            (cDNA clone MGC:2285 IMAGE:3345005), complete cds.
ACCESSION   BC002463
VERSION     BC002463.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 5 Row: n Column: 17
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 19557676.
FEATURES             Location/Qualifiers
     source          1..1540
                     /db_xref="H-InvDB:HIT000030913"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:2285 IMAGE:3345005"
                     /tissue_type="Lymph, Burkitt lymphoma"
                     /clone_lib="NIH_MGC_8"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..1540
                     /gene="HLA-C"
                     /gene_synonym="D6S204"
                     /gene_synonym="HLA-JY3"
                     /db_xref="GeneID:3107"
                     /db_xref="MIM:142840"
     CDS             5..1105
                     /gene="HLA-C"
                     /gene_synonym="D6S204"
                     /gene_synonym="HLA-JY3"
                     /codon_start=1
                     /product="HLA-C protein"
                     /protein_id="AAH02463.1"
                     /db_xref="GeneID:3107"
                     /db_xref="MIM:142840"
                     /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEP
                     RFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSL
                     RNLRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAA
                     DTAAQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLV
                     SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSG
                     EEQRYTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCR
                     RKSSGGKGGSCSQAASSNSAQGSDESLIACKA"
     misc_feature    80..613
                     /gene="HLA-C"
                     /gene_synonym="D6S204"
                     /gene_synonym="HLA-JY3"
                     /note="MHC_I; Region: Class I Histocompatibility antigen,
                     domains alpha 1 and 2"
                     /db_xref="CDD:pfam00129"
     misc_feature    668..883
                     /gene="HLA-C"
                     /gene_synonym="D6S204"
                     /gene_synonym="HLA-JY3"
                     /note="IGc1; Region: Immunoglobulin C-Type"
                     /db_xref="CDD:smart00407"
BASE COUNT          335 a          446 c          464 g          295 t
ORIGIN      
        1 cgagatgcgg gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct
       61 gaccgagacc tgggcctgct cccactccat gaggtatttc tacaccgccg tgtcccggcc
      121 cggccgcgga gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg
      181 gttcgacagc gacgccgcga gtccaagagg ggagccgcgg gcgccgtggg tggagcagga
      241 ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg
      301 agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccgggt ctcacaccct
      361 ccagtggatg tatggctgcg acctggggcc cgacgggcgc ctcctccgcg ggtatgacca
      421 gtccgcctac gacggcaagg attacatcgc cctgaacgag gacctgcgct cctggaccgc
      481 cgcggacacg gcggctcaga tcacccagcg caagtgggag gcggcccgtg cggcggagca
      541 gcagagagcc tacctggagg gcacgtgcgt ggagtggctc cgcagatacc tggagaacgg
      601 gaaggagacg ctgcagcgcg cggaacaccc aaagacacac gtgacccacc atctcgtctc
      661 tgaccatgag gccaccctga ggtgctgggc cctgggcttc taccctgcgg agatcacact
      721 gacctggcag cgggatggcg aggaccaaac tcaggacacc gagcttgtgg agaccaggcc
      781 agcaggagat ggaaccttcc agaagtgggc agctgtggtg gtgccttctg gagaagagca
      841 gagatacacg tgccatgtgc agcacgaggg gctgccggag cccctcaccc tgagatggga
      901 gccatcttcc cagcccacca tccccatcgt gggcatcgtt gctggcctgg ctgtcctggc
      961 tgtcctagct gtcctaggag ctgtggtggc tgttgttatg tgtaggagga agagctcagg
     1021 tggaaaagga gggagctgct ctcaggctgc gtccagcaac agtgcccagg gctctgatga
     1081 gtctctcatc gcttgtaaag cctgagacag ctgcctgtgt gggactgaga tgcaggattt
     1141 cttcacacct ctcctttgtg acttcaagag cctctggcat ctctttctgc aaaggcatct
     1201 gaatgcgtct gcgttcctgt tagcataatg tgaggaggtg gagagacagc ccacccccgt
     1261 gtccaccgtg acccctgtcc ccacactgac ctgtgttccc tccccgatca tctttcctgt
     1321 tccagagaag tgggctggat gtctccatct ctgtctcaac tttacgtgta ctgagctgca
     1381 acttcttact tccctactga aaataagaat ctgaatataa atttgttttc tcaaatattt
     1441 gctatgagag gttgatggat taattaaata agtcaatccc tggaagttga gagagcaaat
     1501 aaagacctga gaaccttcca gaaaaaaaaa aaaaaaaaaa
//