LOCUS BC002463 1540 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens major histocompatibility complex, class I, C, mRNA (cDNA clone MGC:2285 IMAGE:3345005), complete cds. ACCESSION BC002463 VERSION BC002463.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1540) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1540) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis M. Staudt, M.D., Ph.D. cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: n Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19557676. FEATURES Location/Qualifiers source 1..1540 /db_xref="H-InvDB:HIT000030913" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:2285 IMAGE:3345005" /tissue_type="Lymph, Burkitt lymphoma" /clone_lib="NIH_MGC_8" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1540 /gene="HLA-C" /gene_synonym="D6S204" /gene_synonym="HLA-JY3" /db_xref="GeneID:3107" /db_xref="MIM:142840" CDS 5..1105 /gene="HLA-C" /gene_synonym="D6S204" /gene_synonym="HLA-JY3" /codon_start=1 /product="HLA-C protein" /protein_id="AAH02463.1" /db_xref="GeneID:3107" /db_xref="MIM:142840" /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEP RFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSL RNLRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAA DTAAQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLV SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSG EEQRYTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCR RKSSGGKGGSCSQAASSNSAQGSDESLIACKA" misc_feature 80..613 /gene="HLA-C" /gene_synonym="D6S204" /gene_synonym="HLA-JY3" /note="MHC_I; Region: Class I Histocompatibility antigen, domains alpha 1 and 2" /db_xref="CDD:pfam00129" misc_feature 668..883 /gene="HLA-C" /gene_synonym="D6S204" /gene_synonym="HLA-JY3" /note="IGc1; Region: Immunoglobulin C-Type" /db_xref="CDD:smart00407" BASE COUNT 335 a 446 c 464 g 295 t ORIGIN 1 cgagatgcgg gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct 61 gaccgagacc tgggcctgct cccactccat gaggtatttc tacaccgccg tgtcccggcc 121 cggccgcgga gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg 181 gttcgacagc gacgccgcga gtccaagagg ggagccgcgg gcgccgtggg tggagcagga 241 ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg 301 agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccgggt ctcacaccct 361 ccagtggatg tatggctgcg acctggggcc cgacgggcgc ctcctccgcg ggtatgacca 421 gtccgcctac gacggcaagg attacatcgc cctgaacgag gacctgcgct cctggaccgc 481 cgcggacacg gcggctcaga tcacccagcg caagtgggag gcggcccgtg cggcggagca 541 gcagagagcc tacctggagg gcacgtgcgt ggagtggctc cgcagatacc tggagaacgg 601 gaaggagacg ctgcagcgcg cggaacaccc aaagacacac gtgacccacc atctcgtctc 661 tgaccatgag gccaccctga ggtgctgggc cctgggcttc taccctgcgg agatcacact 721 gacctggcag cgggatggcg aggaccaaac tcaggacacc gagcttgtgg agaccaggcc 781 agcaggagat ggaaccttcc agaagtgggc agctgtggtg gtgccttctg gagaagagca 841 gagatacacg tgccatgtgc agcacgaggg gctgccggag cccctcaccc tgagatggga 901 gccatcttcc cagcccacca tccccatcgt gggcatcgtt gctggcctgg ctgtcctggc 961 tgtcctagct gtcctaggag ctgtggtggc tgttgttatg tgtaggagga agagctcagg 1021 tggaaaagga gggagctgct ctcaggctgc gtccagcaac agtgcccagg gctctgatga 1081 gtctctcatc gcttgtaaag cctgagacag ctgcctgtgt gggactgaga tgcaggattt 1141 cttcacacct ctcctttgtg acttcaagag cctctggcat ctctttctgc aaaggcatct 1201 gaatgcgtct gcgttcctgt tagcataatg tgaggaggtg gagagacagc ccacccccgt 1261 gtccaccgtg acccctgtcc ccacactgac ctgtgttccc tccccgatca tctttcctgt 1321 tccagagaag tgggctggat gtctccatct ctgtctcaac tttacgtgta ctgagctgca 1381 acttcttact tccctactga aaataagaat ctgaatataa atttgttttc tcaaatattt 1441 gctatgagag gttgatggat taattaaata agtcaatccc tggaagttga gagagcaaat 1501 aaagacctga gaaccttcca gaaaaaaaaa aaaaaaaaaa //