LOCUS BC002447 2760 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens putative homeodomain transcription factor 1, mRNA (cDNA clone MGC:1307 IMAGE:3346990), complete cds. ACCESSION BC002447 VERSION BC002447.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2760) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2760) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC002447.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: o Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5729975. FEATURES Location/Qualifiers source 1..2760 /db_xref="H-InvDB:HIT000030900" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1307 IMAGE:3346990" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2760 /gene="PHTF1" /gene_synonym="PHTF" /db_xref="GeneID:10745" /db_xref="MIM:604950" CDS 597..2510 /gene="PHTF1" /gene_synonym="PHTF" /codon_start=1 /product="PHTF1 protein" /protein_id="AAH02447.1" /db_xref="GeneID:10745" /db_xref="MIM:604950" /translation="MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMG HIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWWIQVTSLRIFVW LLLLYFMQVIAIVLYLMMPIVNISEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNR RRRKLRKTVNGDGSRENGNNSSDKVRGIETLESVPIIGGFWETIFGNRIKRVKLISNK GTETDNDPSCVHPIIKRRQCRPEIRMWQTREKAKFSDGEKCRREAFRRLGNGVSDDLS SEEDGEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTTTRWCHIVRDS DSLAESEFESAAFSQGSRSGVSGGSRSLNMSRRDSESTRHDSETEDMLWDDLLHGPEC RSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPSSDRVSAIIWEGNECK KMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKSI SAEEILTLFCGAPPVTPIIVLSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFS HITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIA FICCAQVKVSHLL" BASE COUNT 759 a 566 c 676 g 759 t ORIGIN 1 gtcactgcat cccggcgcgg cccgcagaag acgagcgccg ctgccgcctc ctcctcccgg 61 gctcccgggc tctcggggtc cggggccttt gcacctgtct tttccagctg ggcacaaagc 121 cttttgctgt cgccgtggcg actggaggcc ttcactttta atccccctca ttttccagtt 181 cattctctgc ttattttctg gtcagtccgt gaccctgtag gcggcctctg accggcgatc 241 gatttgccgc cctcagggcg ctgggcggcc ggctgcctcc gaagctgggg cggcctccgc 301 ggtctccatg gtaacggcct ctccggcgtc tccgcctgga ggggaagatg cggcctgcct 361 ggcccgccgc ctcgcccccg gcctcacggt gggaccccgg gcactgagga cggaggtccc 421 gggcgctggc ccgcggggca acgggcacta gctggagaaa gagcagctca tggagaggct 481 gagagaagcg gttttcgcgt cctacccaaa ctgggagagt aaccttcagc agctggactc 541 accgattggt tttccttcat tttcagtgaa atcccattct ctggctggag acacagatgg 601 cctcaaatga gagagatgct atatcgtggt accaaaagaa gattggagcc tacgatcagc 661 agatatggga aaagtcaatc gaacagactc agattaaggg tttgaaaaac aaaccgaaaa 721 agatgggcca cataaagcca gacttgattg acgttgactt aatcagaggg tcaacatttg 781 ccaaagcaaa acctgaaatt ccatggacat ctctgactcg gaaggggctt gttcgagttg 841 tattttttcc attgttcagc aattggtgga ttcaggttac ctctttaaga atctttgttt 901 ggctgttact actttatttc atgcaagtta tagcaattgt cttatatttg atgatgccta 961 ttgtgaacat aagtgaagta cttggaccct tgtgccttat gctactcatg ggaactgtcc 1021 actgtcaaat tgtgtctact cagataacaa gaccatcagg aaacaatgga aatcgaagaa 1081 gaagaaaatt acgaaaaact gtaaatggtg atgggagccg agaaaatgga aataactcct 1141 ctgataaagt cagaggaata gaaactttgg aatctgtacc cattattggt ggtttttggg 1201 agactatctt tggcaacagg attaaaagag taaaattaat atctaacaaa gggactgaaa 1261 ctgacaatga cccaagttgt gtccatccta tcattaagag gagacaatgt cgaccagaga 1321 ttagaatgtg gcaaacaaga gagaaagcaa aattttcaga tggagaaaag tgccgtaggg 1381 aggcttttag gcgtttgggt aatggggtgt ctgatgacct gtcaagtgaa gaagatggtg 1441 aagcacggac acagatgata ttattgcgta ggagtgtgga aggggcctca agtgacaatg 1501 gttgtgaagt taagaataga aaatcaatac tttcaaggca cctaaactct caggtaaaga 1561 aaaccactac aaggtggtgt catattgtgc gggattcaga tagtctggct gaatcagaat 1621 ttgaatcagc agccttcagc cagggctcta gatcgggtgt gagtggtggc tctcgaagcc 1681 tcaacatgtc aagaagagac tcagaaagca cccgccatga ctcggagact gaggacatgt 1741 tatgggacga cctgctacat ggcccagagt gccggtcatc tgtcaccagt gacagtgagg 1801 gggcccatgt gaataccctt cactcaggga ccaaacgtga ccccaaagag gatgtttttc 1861 agcagaatca tttattctgg cttcagaatt caagtccttc ctctgatcga gttagtgcaa 1921 taatctggga ggggaatgag tgcaaaaaga tggatatgtc tgtgttggaa ataagtggca 1981 tcatcatgag cagggtcaat gcctatcagc aaggagtagg ttatcagatg ctgggaaatg 2041 ttgtcactat tggattagca ttttttccat tcttacatcg acttttccgt gagaagagcc 2101 ttgaccaact aaagtccatt tcagctgagg agatcttgac tctcttttgt ggggcaccac 2161 ctgttacacc tattattgtt ttgtcgataa ttaatttttt tgaaagattg tgtcttactt 2221 ggatgttttt tttcatgatg tgtgtggcag agagaacata taaacagaga tttttatttg 2281 caaaactctt cagccatatt acttctgcca ggaaagctag gaaatatgaa atacctcatt 2341 tcagacttaa gaaggtggag aatattaaaa tatggttatc actgcgttcc tatctaaaga 2401 gacgggggcc acagcgttca gttgatgtgg ttgtatcctc ggttttccta ctgacacttt 2461 cgattgcttt catttgttgt gctcaggtaa aagtttcaca tctgctttaa ggaaaaatga 2521 aaattctatt atagagttca ctttctgttt tagacttagg tcactgtcct taagtatgta 2581 tttttaatgc atctacattt tttactattt tggatgtttg gtaatttttc taacttttca 2641 aaatgggaat acaagtaatt ctgaagtcct ttcaaactgt aagatcgctc taattttagt 2701 tggtaattat taattgataa taaaactatc atatgattgc aaaaaaaaaa aaaaaaaaaa //