LOCUS BC002442 1269 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stomatin (EPB72)-like 2, mRNA (cDNA clone MGC:1179
IMAGE:3346384), complete cds.
ACCESSION BC002442
VERSION BC002442.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1269)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1269)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC002442.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: m Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7305502.
FEATURES Location/Qualifiers
source 1..1269
/db_xref="H-InvDB:HIT000030895"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1179 IMAGE:3346384"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1269
/gene="STOML2"
/gene_synonym="HSPC108"
/gene_synonym="SLP-2"
/db_xref="GeneID:30968"
/db_xref="HGNC:HGNC:14559"
/db_xref="MIM:608292"
CDS 38..1108
/gene="STOML2"
/gene_synonym="HSPC108"
/gene_synonym="SLP-2"
/codon_start=1
/product="stomatin (EPB72)-like 2"
/protein_id="AAH02442.1"
/db_xref="GeneID:30968"
/db_xref="HGNC:HGNC:14559"
/db_xref="MIM:608292"
/translation="MLARAARGTGALLLRGSLLASGRAPRRASSGLPRNTVVLFVPQQ
EAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQID
GVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDA
INQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAINVA
EGKKQAQILASEAEKAEQINQAAGEASAVLAKAKAKAEAIRILAAALTQHNGDAAASL
TVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQAMGVYGALTKAPVPGTPDSLSSG
SSRDVQGTDASLDEELDRVKMS"
BASE COUNT 307 a 328 c 368 g 266 t
ORIGIN
1 gtctcgttgg ttccggaggt cgctgcggcg gtgggaaatg ctggcgcgcg cggcgcgggg
61 cactggggcc cttttgctga ggggctctct actggcttct ggccgcgctc cgcgccgcgc
121 ctcctctgga ttgccccgaa acaccgtggt actgttcgtg ccgcagcagg aggcctgggt
181 ggtggagcga atgggccgat tccaccggat cctggagcct ggtttgaaca tcctcatccc
241 tgtgttagac cggatccgat atgtgcagag tctcaaggaa attgtcatca acgtgcctga
301 gcagtcggct gtgactctcg acaatgtaac tctgcaaatc gatggagtcc tttacctgcg
361 catcatggac ccttacaagg caagctacgg tgtggaggac cctgagtatg ccgtcaccca
421 gctagctcaa acaaccatga gatcagagct cggcaaactc tctctggaca aagtcttccg
481 ggaacgggag tccctgaatg ccagcattgt ggatgccatc aaccaagctg ctgactgctg
541 gggtatccgc tgcctccgtt atgagatcaa ggatatccat gtgccacccc gggtgaaaga
601 gtctatgcag atgcaggtgg aggcagagcg gcggaaacgg gccacagttc tagagtctga
661 ggggacccga gagtcggcca tcaatgtggc agaagggaag aaacaggccc agatcctggc
721 ctccgaagca gaaaaggctg aacagataaa tcaggcagca ggagaggcca gtgcagttct
781 ggcgaaggcc aaggctaaag ctgaagctat tcgaatcctg gctgcagctc tgacacaaca
841 taatggagat gcagcagctt cactgactgt ggccgagcag tatgtcagcg cgttctccaa
901 actggccaag gactccaaca ctatcctact gccctccaac cctggcgatg tcaccagcat
961 ggtggctcag gccatgggtg tatatggagc cctcaccaaa gccccagtgc cagggactcc
1021 agactcactc tccagtggga gcagcagaga tgtccagggt acagatgcaa gtcttgatga
1081 ggaacttgat cgagtcaaga tgagttagtg gagctgggct tggccaggga gtctggggac
1141 aaggaagcag attttcctga ttctggctct agcttccctg ccaagatttt ggtttttatt
1201 tttttatttg aactttagtc gtgtaataaa ctcaccagtg gcaaaccaaa aaaaaaaaaa
1261 aaaaaaaaa
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