LOCUS BC002422 4244 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens SON DNA binding protein, mRNA (cDNA clone
IMAGE:3161999), partial cds.
ACCESSION BC002422
VERSION BC002422.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4244)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4244)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002422.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: m Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..4244
/db_xref="H-InvDB:HIT000086129"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3161999"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>4244
/gene="SON"
/gene_synonym="BASS1"
/gene_synonym="C21orf50"
/gene_synonym="DBP-5"
/gene_synonym="FLJ21099"
/gene_synonym="KIAA1019"
/gene_synonym="NREBP"
/gene_synonym="SON3"
/db_xref="GeneID:6651"
/db_xref="MIM:182465"
CDS 149..>4244
/gene="SON"
/gene_synonym="BASS1"
/gene_synonym="C21orf50"
/gene_synonym="DBP-5"
/gene_synonym="FLJ21099"
/gene_synonym="KIAA1019"
/gene_synonym="NREBP"
/gene_synonym="SON3"
/codon_start=1
/product="SON protein"
/protein_id="AAH02422.1"
/db_xref="GeneID:6651"
/db_xref="MIM:182465"
/translation="MVLELPGQPVATTALELPGQPSVTGVPELPGLPSATRALELSGQ
PVATGALELPGPLMAAGALEFSGQSGAAGALELLGQPLATGVLELPGQPGAPELPGQP
VATVALEISVQSVVTTSELSTMTVSQSLEVPSTTALESYNTVAQELPTTLVGETSVTV
GVDPLMAPESHILASNTMETHILASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTM
DSQMLATSSMDSQMLATSSMDSQMLATSTMDSQMLATSSMDSQMLATSSMDSQMLATS
SMDSQMLATSSMDSQMLATSTMDSQMLATSTMDSQMLATSSMDSQMLASGTMDSQMLA
SGTMDAQMLASGTMDAQMLASSTQDSAMLGSKSPDPYRLAQDPYRLAQDPYRLGHDPY
RLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRIAPRSYRIAPRPYRLAPRPLML
ASRRSMMMSYAAERSMMSSYERSMMSYERSMMSPMAERSMMSAYERSMMSAYERSMMS
PMAERSMMSAYERSMMSAYERSMMSPMADRSMMSMGADRSMMSSYSAADRSMMSSYSA
ADRSMMSSYTADRSMMSMAADSYTDSYTDTYTEAYMVPPLPPEEPPTMPPLPPEEPPM
TPPLPPEEPPEGPALPTEQSALTAENTWPTEVPSLPSEESVSQPEPPVSQSEISEPSA
VPTDYSVSASDPSVLVSEAAVTVPEPPPEPESSITLTPVESAVVAEEHEVVPERPVTC
MVSETPAMSAEPTVLASEPPVMSETAETFDSMRASGHVASEVSTSLLVPAVTTPVLAE
SILEPPAMAAPESSAMAVLESSAVTVLESSTVTVLESSTVTVLEPSVVTVPEPPVVAE
PDYVTIPVPVVSALEPSVPVLEPAVSVLQPSMIVSEPSVSVQESTVTVSEPAVTVSEQ
TQVIPTEVAIESTPMILESSIMSSHVMKGINLSSGDQNLAPEIGMQEIALHSGEEPHA
EEHLKGDFYESEHGINIDLNINNHLIAKEMEHNTVCAAGTSPVGEIGEEKILPTSETK
QRTVLDTYPGVSEADAGETLSSTGPFALEPDATGTSKGIEFTTASTLSLVNKYDVDLS
LTTQDTEHDMVISTSPSGGSEADIEGPLPAKDIHLDLPSNNNLVSKDTEEPLPVKESD
QTLAALLSPKESSGGEKEVPPPPKETLPDSGFSANIEDINEADLVRPLLPKDMERLTS
LRAGIEGPLLASDVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKK
NKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRS
RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSREKKKKK"
BASE COUNT 1139 a 1019 c 1035 g 1051 t
ORIGIN
1 gcctgcggta acagtagcaa tggagttgac cgaacaacct gtgacgacga cagagttgga
61 gcagcctgtg gggatgacaa cggtggaaca tcctgggcat cctgaggtga caacggcaac
121 agggttgctg gggcagcctg aggcaacgat ggtgctggag ttgccaggac agccagtggc
181 aacgacagcg ctggagttgc cggggcagcc ttcggtgact ggggtgccag agttgccagg
241 gctgccttcg gcaactaggg cactggagtt gtcggggcag cctgtggcaa ctggggcact
301 ggagttgcct gggccgctca tggcagctgg ggcactggag ttctcggggc agtctggggc
361 agctggagca ctggagcttt tggggcagcc tctggcaaca ggggtgctgg agttgccagg
421 gcagcctggg gcgccagagt tgcctgggca gcctgtggca actgtggcgc tggagatctc
481 tgttcagtct gtggtgacaa catcggagct gtcaacgatg accgtgtcgc agtccctgga
541 ggtgccctcg acgacagcgc tggaatccta taatacggta gcacaggagc tgcctactac
601 attagtgggg gagacttctg taacagtagg agtggatccc ttgatggccc cagaatccca
661 tatattagct tctaacacca tggagaccca tatattagca tccaacacca tggactccca
721 aatgctagcg tccaacacca tggactccca gatgctagca tccaacacca tggactccca
781 gatgttagcg tctagcacca tggactccca gatgttagca actagctcca tggactccca
841 gatgttagca actagctcca tggactccca gatgttagca actagcacta tggactccca
901 gatgttagca accagttcca tggactccca gatgttagca accagctcca tggactccca
961 gatgttagca accagctcca tggactccca gatgttagca accagctcca tggactccca
1021 gatgttagca accagcacca tggattctca gatgttagca accagcacca tggactccca
1081 gatgttagca actagctcaa tggattccca gatgttagca tctggcacta tggactctca
1141 aatgttagct tctggcacca tggatgctca gatgttagcg tctggtacca tggatgccca
1201 gatgttagcg tctagtaccc aagattctgc tatgttgggt tcaaaatctc ctgatcccta
1261 taggttagct caggatcctt acaggttagc tcaggatccc tataggttgg gccatgaccc
1321 ctatagatta ggtcatgatg cttacaggtt aggacaagac ccttatagat taggccatga
1381 tccctacaga ctaactcctg atccctatag gatgtcacct agaccctaca ggatagcacc
1441 caggtcctat agaatagcac ccaggccata taggttagca cctagacccc tgatgttagc
1501 atctagacgt tctatgatga tgtcctatgc tgcagaacgt tccatgatgt catcttacga
1561 acgctctatg atgtcttatg agcggtctat gatgtcccct atggctgaac gctctatgat
1621 gtcagcctac gagcgctcta tgatgtcagc ctacgagcgc tctatgatgt cccctatggc
1681 tgagcgctct atgatgtcag cttatgaacg ctccatgatg tcagcttatg aacgctccat
1741 gatgtcccca atggctgatc gatctatgat gtccatgggt gctgaccggt ctatgatgtc
1801 gtcatactct gctgctgacc ggtctatgat gtcatcgtac tctgcagctg accgatctat
1861 gatgtcatct tatactgctg atcgttcaat gatgtctatg gctgctgatt cttacaccga
1921 ttcttacact gacacatata cagaggcata tatggtgcca cctttgcctc ctgaagagcc
1981 cccaacaatg ccaccgttgc cacctgagga gccaccaatg acaccaccat tgcctcctga
2041 ggaaccacca gagggtccag cattgcccac tgagcagtca gcattaacag ctgaaaatac
2101 ttggcctaca gaggtgccat cattaccatc tgaagagtct gtatcgcagc ctgagcctcc
2161 tgtgagtcaa agtgagattt cggagccttc agcagtgcct actgattatt cagtgtcagc
2221 atcagatccc tcagttttag tatcagaggc tgctgtgact gttccagaac caccaccaga
2281 gccagaatct tcaattacgt taacacctgt agagtctgca gtagtagcag aagaacatga
2341 agttgttcca gagagaccag tgacttgtat ggtatctgaa actcccgcca tgtcagctga
2401 accaactgtg ttagcatcag agcctcctgt tatgtcagag acagcagaaa catttgattc
2461 catgagagcc tcaggacatg ttgcctcaga agtatctaca tccttgttgg ttccagcagt
2521 aactactcca gtgctggcag agagcattct ggagccgcca gccatggctg ccccagagtc
2581 ttcagctatg gctgtcctgg agtcttcggc tgtgaccgtc ctggagtctt cgactgtgac
2641 tgtcctggag tcttcgactg taactgtcct ggagccttcg gttgtgactg tcccggagcc
2701 tcctgttgtg gctgagccag actatgttac cattcctgtg ccagttgttt ctgcgctgga
2761 gccttctgtg cctgttctgg aaccagcggt gtcagtcctt caaccttcta tgattgtttc
2821 agaaccatct gtttctgtcc aggaatcgac tgtgacagtt tcagagcctg ctgtcacagt
2881 ctcagagcag actcaagtaa taccaactga ggtggctata gagtccacac caatgatact
2941 ggaatctagt atcatgtcat cacatgttat gaaaggaatt aatctatcct ctggtgatca
3001 aaatcttgct ccagagattg gcatgcagga gattgcattg cattcaggtg aagaaccaca
3061 tgctgaggaa cacctgaaag gtgactttta cgaaagtgaa catggtataa atatagacct
3121 taatataaat aatcatttaa ttgctaaaga gatggaacat aatacagtgt gtgctgctgg
3181 tactagtcct gttggggaaa ttggtgaaga gaaaattttg cccaccagtg agactaaaca
3241 gcgcacagta ttggatacct accctggtgt tagtgaagct gatgcaggag aaactctatc
3301 ttctactggt ccttttgctc tggaacctga tgcaacagga actagtaagg gtattgaatt
3361 taccacagca tctactctca gtttagttaa taaatatgat gttgatttat ctttaactac
3421 tcaagatact gaacatgaca tggtaatttc caccagtcct agtggtggta gtgaagctga
3481 cattgaaggg cctttgcctg ctaaagatat tcatcttgat ttaccatcta ataataacct
3541 tgttagtaag gatacagaag aaccattacc tgtaaaagag agtgaccaga cattagcagc
3601 tctgctcagc cctaaagaaa gtagtggagg agaaaaagaa gtacctcccc ctcctaaaga
3661 gacactgcct gattcaggat tttctgccaa tattgaggat attaatgaag cagatttagt
3721 gagaccgtta cttcctaagg acatggaacg tcttacaagc cttagagctg gcattgaagg
3781 acctttactt gcaagtgatg ttggacgtga cagatctgct gccagcccgg ttgtaagtag
3841 tatgccagaa agagcttcag agtcttcttc agaggaaaaa gatgattatg aaatttttgt
3901 aaaagttaag gacactcacg aaaaaagcaa gaaaaataag aaccgtgata agggggagaa
3961 agagaagaaa agagactctt cattaagatc tcgaagtaag cgttccaaat cttctgaaca
4021 caaatcacgc aagcgtacca gtgaatctcg ttctagggca agaaagagat catctaagtc
4081 caagtctcat cgctctcaga cacgttcacg gtcacgttca agacgcagga ggagaagcag
4141 cagatcaaga tcaaagtcta gaggaagaag atctgtatca aaagagaagc gcaaaagatc
4201 tccaaagcac agatccaagt ctagggaaaa aaaaaaaaaa aaaa
//