LOCUS BC002416 2352 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens biglycan, mRNA (cDNA clone MGC:2298 IMAGE:3162633),
complete cds.
ACCESSION BC002416
VERSION BC002416.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2352)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2352)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC002416.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: c Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34304351.
FEATURES Location/Qualifiers
source 1..2352
/db_xref="H-InvDB:HIT000030877"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2298 IMAGE:3162633"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2352
/gene="BGN"
/gene_synonym="DSPG1"
/gene_synonym="PG-S1"
/gene_synonym="PGI"
/gene_synonym="SLRR1A"
/db_xref="GeneID:633"
/db_xref="HGNC:HGNC:1044"
/db_xref="MIM:301870"
CDS 130..1236
/gene="BGN"
/gene_synonym="DSPG1"
/gene_synonym="PG-S1"
/gene_synonym="PGI"
/gene_synonym="SLRR1A"
/codon_start=1
/product="biglycan"
/protein_id="AAH02416.1"
/db_xref="GeneID:633"
/db_xref="HGNC:HGNC:1044"
/db_xref="MIM:301870"
/translation="MWPLWRLVSLLALSQALPFEQRGFWDFTLDDGPFMMNDEEASGA
DTSGVLDPDSVTPTYSAMCPFGCHCHLRVVQCSDLGLKSVPKEISPDTTLLDLQNNDI
SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS
LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA
KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL
PTLRELHLDNNKLARVPSGLPDLKLLQVVYLHSNNITKVGVNDFCPMGFGVKRAYYNG
ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK"
BASE COUNT 457 a 839 c 582 g 474 t
ORIGIN
1 cccaggagtg agtagctgct ttcggtccgc cggacacacc ggacagatag acgtgcggac
61 ggcccaccac cccagccctc caactagtca gcctgcgcct ggcgcctccc ctctccaggt
121 ccatccgcca tgtggcccct gtggcgcctc gtgtctctgc tggccctgag ccaggccctg
181 ccctttgagc agagaggctt ctgggacttc accctggacg atgggccatt catgatgaac
241 gatgaggaag cttcgggcgc tgacacctca ggcgtcctgg acccggactc tgtcacaccc
301 acctacagcg ccatgtgtcc tttcggctgc cactgccacc tgcgggtggt tcagtgctcc
361 gacctgggtc tgaagtctgt gcccaaagag atctcccctg acaccacgct gctggacctg
421 cagaacaacg acatctccga gctccgcaag gatgacttca agggtctcca gcacctctac
481 gccctcgtcc tggtgaacaa caagatctcc aagatccatg agaaggcctt cagcccactg
541 cggaagctgc agaagctcta catctccaag aaccacctgg tggagatccc gcccaaccta
601 cccagctccc tggtggagct ccgcatccac gacaaccgca tccgcaaggt gcccaaggga
661 gtgttcagcg ggctccggaa catgaactgc atcgagatgg gcgggaaccc actggagaac
721 agtggctttg aacctggagc cttcgatggc ctgaagctca actacctgcg catctcagag
781 gccaagctga ctggcatccc caaagacctc cctgagaccc tgaatgaact ccacctagac
841 cacaacaaaa tccaggccat cgaactggag gacctgcttc gctactccaa gctgtacagg
901 ctgggcctag gccacaacca gatcaggatg atcgagaacg ggagcctgag cttcctgccc
961 accctccggg agctccactt ggacaacaac aagttggcca gggtgccctc agggctccca
1021 gacctcaagc tcctccaggt ggtctatctg cactccaaca acatcaccaa agtgggtgtc
1081 aacgacttct gtcccatggg cttcggggtg aagcgggcct actacaacgg catcagcctc
1141 ttcaacaacc ccgtgcccta ctgggaggtg cagccggcca ctttccgctg cgtcactgac
1201 cgcctggcca tccagtttgg caactacaaa aagtagaggc agctgcagcc accgcggggc
1261 ctcagtgggg gtctctgggg aacacagcca gacatcctga tggggaggca gagccaggaa
1321 gctaagccag ggcccagctg cgtccaaccc agccccccac ctcgggtccc tgaccccagc
1381 tcgatgcccc atcaccgcct ctccctggct cccaagggtg caggtgggcg caaggcccgg
1441 cccccatcac atgttccctt ggcctcagag ctgcccctgc tctcccacca cagccaccca
1501 gaggcacccc atgaagcttt tttctcgttc actcccaaac ccaagtgtcc aaggctccag
1561 tcctaggaga acagtccctg ggtcagcagc caggaggcgg tccataagaa tggggacagt
1621 gggctctgcc agggctgccg cacctgtcca gacacacatg ttctgttcct cctcctcatg
1681 catttccagc ctttcaaccc tccccgactc tgcggctccc ctcagccccc ttgcaagttc
1741 atggcctgtc cctcccagac ccctgctcca ctggcccttc gaccagtcct cccttctgtt
1801 ctctctttcc ccgtccttcc tctctctctc tctctctctc tctctctctt tctgtgtgtg
1861 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tcttgtgctt cctcagacct ttctcgcttc
1921 tgagcttggt ggcctgttcc ctccatctct ccgaacctgg cttcgcctgt ccctttcact
1981 ccacaccctc tggccttctg ccttgagctg ggactgcttt ctgtctgtcc ggcctgcacc
2041 cagcccctgc ccacaaaacc ccagggacag cggtctcccc agcctgccct gctcaggcct
2101 tgcccccaaa cctgtactgt cccggaggag gttgggaggt ggaggcccag catcccgcgc
2161 agatgacacc atcaaccgcc agagtcccag acaccggttt tcctagaagc ccctcacccc
2221 cactggccca ctggtggcta ggtctcccct tatccttctg gtccagcgca aggaggggct
2281 gcttctgagg tcggtggctg tctttccatt aaagaaacac cgtgcaacgt gaaaaaaaaa
2341 aaaaaaaaaa aa
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