LOCUS BC002414 2682 bp mRNA linear HUM 30-DEC-2006 DEFINITION Homo sapiens vacuolar protein sorting 35 homolog (S. cerevisiae), mRNA (cDNA clone MGC:2587 IMAGE:3162255), complete cds. ACCESSION BC002414 VERSION BC002414.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2682) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2682) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 8, 2003 this sequence version replaced BC002414.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: a Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 41352714. FEATURES Location/Qualifiers source 1..2682 /db_xref="H-InvDB:HIT000030875" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:2587 IMAGE:3162255" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_19" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2682 /gene="VPS35" /gene_synonym="DKFZp434E1211" /gene_synonym="DKFZp434P1672" /gene_synonym="MEM3" /db_xref="GeneID:55737" /db_xref="HGNC:HGNC:13487" /db_xref="MIM:606931" CDS 7..2397 /gene="VPS35" /gene_synonym="DKFZp434E1211" /gene_synonym="DKFZp434P1672" /gene_synonym="MEM3" /codon_start=1 /product="vacuolar protein sorting 35 homolog (S. cerevisiae)" /protein_id="AAH02414.1" /db_xref="GeneID:55737" /db_xref="HGNC:HGNC:13487" /db_xref="MIM:606931" /translation="MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALK HASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAG NIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNI LPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRI LVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHL QTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVAT VIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSS AVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTE IVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYL ILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQ TISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQ LAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRN TDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTI QVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL" BASE COUNT 824 a 533 c 575 g 750 t ORIGIN 1 gtcgccatgc ctacaacaca gcagtcccct caggatgagc aggaaaagct cttggatgaa 61 gccatacagg ctgtgaaggt ccagtcattc caaatgaaga gatgcctgga caaaaacaag 121 cttatggatg ctctaaaaca tgcttctaat atgcttggtg aactccggac ttctatgtta 181 tcaccaaaga gttactatga actttatatg gccatttctg atgaactgca ctacttggag 241 gtctacctga cagatgagtt tgctaaagga aggaaagtgg cagatctcta cgaacttgta 301 cagtatgctg gaaacattat cccaaggctt taccttttga tcacagttgg agttgtatat 361 gtcaagtcat ttcctcagtc caggaaggat attttgaaag atttggtaga aatgtgccgt 421 ggtgtgcaac atcccttgag gggtctgttt cttcgaaatt accttcttca gtgtaccaga 481 aatatcttac ctgatgaagg agagccaaca gatgaagaaa caactggtga catcagtgat 541 tccatggatt ttgtactgct caactttgca gaaatgaaca agctctgggt gcgaatgcag 601 catcagggac atagccgaga tagagaaaaa agagaacgag aaagacaaga actgagaatt 661 ttagtgggaa caaatttggt gcgcctcagt cagttggaag gtgtaaatgt ggaacgttac 721 aaacagattg ttttgactgg catattggag caagttgtaa actgtaggga tgctttggct 781 caagaatatc tcatggagtg tattattcag gttttccctg atgaatttca cctccagact 841 ttgaatcctt ttcttcgggc ctgtgctgag ttacaccaga atgtaaatgt gaagaacata 901 atcattgctt taattgatag attagcttta tttgctcacc gtgaagatgg acctggaatc 961 ccagcggata ttaaactttt tgatatattt tcacagcagg tggctacagt gatacagtct 1021 agacaagaca tgccttcaga ggatgttgta tctttacaag tctctctgat taatcttgcc 1081 atgaaatgtt accctgatcg tgtggactat gttgataaag ttctagaaac aacagtggag 1141 atattcaata agctcaacct tgaacatatt gctaccagta gtgcagtttc aaaggaactc 1201 accagacttt tgaaaatacc agttgacact tacaacaata ttttaacagt cttgaaatta 1261 aaacattttc acccactctt tgagtacttt gactacgagt ccagaaagag catgagttgt 1321 tatgtgctta gtaatgttct ggattataac acagaaattg tctctcaaga ccaggtggat 1381 tccataatga atttggtatc cacgttgatt caagatcagc cagatcaacc tgtagaagac 1441 cctgatccag aagattttgc tgatgagcag agccttgtgg gccgcttcat tcatctgctg 1501 cgctctgagg accctgacca gcagtacttg attttgaaca cagcacgaaa acattttgga 1561 gctggtggaa atcagcggat tcgcttcaca ctgccacctt tggtatttgc agcttaccag 1621 ctggcttttc gatataaaga gaattctaaa gtggatgaca aatgggaaaa gaaatgccag 1681 aagatttttt catttgccca ccagactatc agtgctttga tcaaagcaga gctggcagaa 1741 ttgcccttaa gactttttct tcaaggagca ctagctgctg gggaaattgg ttttgaaaat 1801 catgagacag tcgcatatga attcatgtcc caggcatttt ctctgtatga agatgaaatc 1861 agcgattcca aagcacagct agctgccatc accttgatca ttggcacttt tgaaaggatg 1921 aagtgcttca gtgaagagaa tcatgaacct ctgaggactc agtgtgccct tgctgcatcc 1981 aaacttctaa agaaacctga tcagggccga gctgtgagca cctgtgcaca tctcttctgg 2041 tctggcagaa acacggacaa aaatggggag gagcttcacg gaggcaagag ggtaatggag 2101 tgcctaaaaa aagctctaaa aatagcaaat cagtgcatgg acccctctct acaagtgcag 2161 ctttttatag aaattctgaa cagatatatc tatttttatg aaaaggaaaa tgatgcggta 2221 acaattcagg ttttaaacca gcttatccaa aagattcgag aagacctccc gaatcttgaa 2281 tccagtgaag aaacagagca gattaacaaa cattttcata acacactgga gcatttgcgc 2341 ttgcggcggg aatcaccaga atccgagggg ccaatttatg aaggtctcat cctttaaaaa 2401 ggaaatagct caccatactc ctttccatgt acatccagtg agggttttat tacgctaggt 2461 ttcccttcca tagattgtgc ctttcagaaa tgctgaggta ggtttcccat ttcttacctg 2521 tgatgtgttt tacccagcac ctccggacac tcaccttcag gaccttaata aaattattca 2581 cttggtaagt gttcaagtct ttctgatcac cccaagtagc atgactgatc tgcaatttaa 2641 aattcctgtg atctgtaaaa aaaaaaaaaa aaaaaaaaaa aa //