LOCUS BC002395 1797 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splicing factor 3a, subunit 3, 60kDa, mRNA (cDNA clone
MGC:8445 IMAGE:2821350), complete cds.
ACCESSION BC002395
VERSION BC002395.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1797)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1797)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC002395.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: f Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54112115.
FEATURES Location/Qualifiers
source 1..1797
/db_xref="H-InvDB:HIT000030858"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8445 IMAGE:2821350"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1797
/gene="SF3A3"
/gene_synonym="PRP9"
/gene_synonym="PRPF9"
/gene_synonym="SAP61"
/gene_synonym="SF3a60"
/db_xref="GeneID:10946"
/db_xref="HGNC:HGNC:10767"
/db_xref="MIM:605596"
CDS 39..1544
/gene="SF3A3"
/gene_synonym="PRP9"
/gene_synonym="PRPF9"
/gene_synonym="SAP61"
/gene_synonym="SF3a60"
/codon_start=1
/product="splicing factor 3a, subunit 3, 60kDa"
/protein_id="AAH02395.1"
/db_xref="GeneID:10946"
/db_xref="HGNC:HGNC:10767"
/db_xref="MIM:605596"
/translation="METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTR
AMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEI
CVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDY
ITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFE
KKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGG
TLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEIL
GEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPI
PYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVT
QIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL"
BASE COUNT 564 a 363 c 450 g 420 t
ORIGIN
1 gttggtggtc tgaattgaga agccgcgact aagggaagat ggagacaata ctggagcagc
61 agcggcgcta tcatgaggag aaggaacggc tcatggacgt catggctaaa gagatgctca
121 ccaagaagtc cacgctccgg gaccagatca attctgatca ccgcactcgg gccatgcaag
181 ataggtatat ggaggtcagt gggaacctga gggatttgta tgatgataag gatggattac
241 gaaaggagga gctcaatgcc atttcaggac ccaatgagtt tgctgaattc tataatagac
301 tcaagcaaat aaaggaattc caccggaagc acccaaatga gatctgtgtg ccaatgtcag
361 tggaatttga ggaactcctg aaggctcgag agaatccaag tgaagaggca caaaacttgg
421 tggagttcac agatgaagag ggatatggtc gttatctcga tctccatgac tgttacctca
481 agtacattaa cctgaaggca tctgagaagc tggattatat cacatacctg tccatctttg
541 accaattatt tgacattcct aaagaaagga agaatgcaga gtataagaga tacctagaga
601 tgctgcttga gtaccttcag gattacacag atagagtgaa gcctctccaa gatcagaatg
661 aactttttgg gaagattcag gctgagtttg agaagaaatg ggagaatggg acctttcctg
721 gatggccgaa agagacaagc agtgccctga cccatgctgg agcccatctt gacctctctg
781 cattctcctc ctgggaggag ttggcttctc tgggtttgga cagattgaaa tctgctctct
841 tagctttagg cttgaaatgt ggcgggaccc tagaagagcg agcccagaga ctattcagta
901 ccaaaggaaa gtccctggag tcacttgata cctctttgtt tgccaaaaat cccaagtcaa
961 agggcaccaa gcgagacact gaaaggaaca aagacattgc ttttctagaa gcccagatct
1021 atgaatatgt agagattctc ggggaacagc gacatctcac tcatgaaaat gtacagcgca
1081 agcaagccag gacaggagaa gagcgagaag aagaggaaga agagcagatc agtgagagtg
1141 agagtgaaga tgaagagaac gagatcattt acaaccccaa aaacctgcca cttggctggg
1201 atggcaaacc tattccctac tggctgtata agcttcatgg cctaaatatc aactacaact
1261 gtgagatttg tggaaactac acctaccgag ggcccaaagc cttccagcga cactttgctg
1321 aatggcgtca tgctcatggc atgaggtgtt tgggcatccc aaacactgct cactttgcta
1381 atgtgacaca gattgaagat gctgtctcct tgtgggccaa actgaaattg cagaaggctt
1441 cagaacgatg gcagcctgac actgaggaag aatatgaaga ctcaagtggg aatgttgtga
1501 ataagaagac atacgaggat ctgaaaagac aaggactgct ctagtgttga gggatgtagc
1561 tcagcttttg ggctagccca ggcttcccta agatctgctt tttctatttc tcccaaccaa
1621 atcctcttaa agaccctttg ctatgtagtc tcatggtcta gcatgcatct tgtagaaaca
1681 aggcatgctg gcagattgca gggttgagat gtgttttatc tgttttatat tttaaaagat
1741 tctgccagaa aataaaacca gaccttgttc taaaaaaaaa aaaaaaaaaa aaaaaaa
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