LOCUS BC002379 3220 bp mRNA linear HUM 17-NOV-2006 DEFINITION Homo sapiens SMAD family member 4, mRNA (cDNA clone MGC:8602 IMAGE:2961238), complete cds. ACCESSION BC002379 VERSION BC002379.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3220) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3220) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002379.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 1 Row: l Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 34147555. FEATURES Location/Qualifiers source 1..3220 /db_xref="H-InvDB:HIT000030845" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8602 IMAGE:2961238" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3220 /gene="SMAD4" /gene_synonym="DPC4" /gene_synonym="JIP" /db_xref="GeneID:4089" /db_xref="HGNC:HGNC:6770" /db_xref="MIM:600993" CDS 234..1892 /gene="SMAD4" /gene_synonym="DPC4" /gene_synonym="JIP" /codon_start=1 /product="SMAD family member 4" /protein_id="AAH02379.1" /db_xref="GeneID:4089" /db_xref="HGNC:HGNC:6770" /db_xref="MIM:600993" /translation="MDNMSITNTPTSNDACLSIVHSLMCHRQGGESETFAKRAIESLV KKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWP DLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLTLQSNAPSSMMVKD EYVHDFEGQPSLSTEGHSIQTIQHPPSNRASTETYSTPALLAPSESNATSTANFPNIP VASTSQPASILGGSHSEGLLQIASGPQPGQQQNGFTGQPATYHHNSTTTWTGSRTAPY TPNLPHHQNGHLQHHPPMPPHPGHYWPVHNELAFQPPISNHPAPEYWCSIAYFEMDVQ VGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECK GEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQ AATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILRMSFVKG WGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD" BASE COUNT 941 a 643 c 672 g 964 t ORIGIN 1 caacaacacg gccctggtcg tcgtcgccgc tgcggtaacg gagcggtttg ggtggcggag 61 cctgcgttcg cgccttccca ctcccctcgc caccgcccga gcccaggtta tcctgaatac 121 atgtctaaca attttccttg caacgttagc tgttgttttt cactgtttcc aaaggatcaa 181 aattgcttca gaaattggag acatatttga tttaaaagga aaaacttgaa caaatggaca 241 atatgtctat tacgaataca ccaacaagta atgatgcctg tctgagcatt gtgcatagtt 301 tgatgtgcca tagacaaggt ggagagagtg aaacatttgc aaaaagagca attgaaagtt 361 tggtaaagaa gctgaaggag aaaaaagatg aattggattc tttaataaca gctataacta 421 caaatggagc tcatcctagt aaatgtgtta ccatacagag aacattggat gggaggcttc 481 aggtggctgg tcggaaagga tttcctcatg tgatctatgc ccgtctctgg aggtggcctg 541 atcttcacaa aaatgaacta aaacatgtta aatattgtca gtatgcgttt gacttaaaat 601 gtgatagtgt ctgtgtgaat ccatatcact acgaacgagt tgtatcacct ggaattgatc 661 tctcaggatt aacactgcag agtaatgctc catcaagtat gatggtgaag gatgaatatg 721 tgcatgactt tgagggacag ccatcgttgt ccactgaagg acattcaatt caaaccatcc 781 agcatccacc aagtaatcgt gcatcgacag agacatacag caccccagct ctgttagccc 841 catctgagtc taatgctacc agcactgcca actttcccaa cattcctgtg gcttccacaa 901 gtcagcctgc cagtatactg gggggcagcc atagtgaagg actgttgcag atagcatcag 961 ggcctcagcc aggacagcag cagaatggat ttactggtca gccagctact taccatcata 1021 acagcactac cacctggact ggaagtagga ctgcaccata cacacctaat ttgcctcacc 1081 accaaaacgg ccatcttcag caccacccgc ctatgccgcc ccatcccgga cattactggc 1141 ctgttcacaa tgagcttgca ttccagcctc ccatttccaa tcatcctgct cctgagtatt 1201 ggtgttccat tgcttacttt gaaatggatg ttcaggtagg agagacattt aaggttcctt 1261 caagctgccc tattgttact gttgatggat acgtggaccc ttctggagga gatcgctttt 1321 gtttgggtca actctccaat gtccacagga cagaagccat tgagagagca aggttgcaca 1381 taggcaaagg tgtgcagttg gaatgtaaag gtgaaggtga tgtttgggtc aggtgcctta 1441 gtgaccacgc ggtctttgta cagagttact acttagacag agaagctggg cgtgcacctg 1501 gagatgctgt tcataagatc tacccaagtg catatataaa ggtctttgat ttgcgtcagt 1561 gtcatcgaca gatgcagcag caggcggcta ctgcacaagc tgcagcagct gcccaggcag 1621 cagccgtggc aggaaacatc cctggcccag gatcagtagg tggaatagct ccagctatca 1681 gtctgtcagc tgctgctgga attggtgttg atgaccttcg tcgcttatgc atactcagga 1741 tgagttttgt gaaaggctgg ggaccggatt acccaagaca gagcatcaaa gaaacacctt 1801 gctggattga aattcactta caccgggccc tccagctcct agacgaagta cttcatacca 1861 tgccgattgc agacccacaa cctttagact gaggtctttt accgttgggg cccttaacct 1921 tatcaggatg gtggactaca aaatacaatc ctgtttataa tctgaagata tatttcactt 1981 ttgttctgct ttatcttttc ataaagggtt gaaaatgtgt ttgctgcctt gctcctagca 2041 gacagaaact ggattaaaac aatttttttt ttcctcttca gaacttgtca ggcatggctc 2101 agagcttgaa gattaggaga aacacattct tattaattct tcacctgtta tgtatgaagg 2161 aatcattcca gtgctagaaa atttagccct ttaaaacgtc ttagagcctt ttatctgcag 2221 aacatcgata tgtatatcat tctacagaat aatccagtat tgctgatttt aaaggcagag 2281 aagttctcaa agttaattca cctatgttat tttgtgtaca agttgttatt gttgaacata 2341 cttcaaaaat aatgtgccat gtgggtgagt taattttacc aagagtaact ttactctgtg 2401 tttaaaaagt aagttaataa tgtattgtaa tctttcatcc aaaatatttt ttgcaagtta 2461 tattagtgaa gatggtttca attcagattg tcttgcaact tcagttttat ttttgccaag 2521 gcaaaaaact cttaatctgt gtgtatattg agaatccctt aaaattacca gacaaaaaaa 2581 tttaaaatta cgtttgttat tcctagtgga tgactgttga tgaagtatac ttttcccctg 2641 ttaaacagta gttgtattct tctgtatttc taggcacaag gttggttgct aagaagccta 2701 taagaggaat ttcttttcct tcattcatag ggaaaggttt tgtatttttt aaaacactaa 2761 aagcagcgtc actctaccta atgtctcact gttctgcaaa ggtggcaatg cttaaactaa 2821 ataatgaata aactgaatat tttggaaact gctaaattct atgttaaata ctgtgcagaa 2881 taatggaaac attacagttc ataataggta gtttggatat ttttgtactt gatttgatgt 2941 gacttttttt ggtataatgt ttaaatcatg tatgttatga tattgtttaa aattcagttt 3001 ttgtatcttg gggcaagact gcaaactttt ttatatcttt tggttattct aagccctttg 3061 ccatcaatga tcatatcaat tggcagtgac tttgtataga gaatttaagt agaaaagttg 3121 cagatgtatt gactgtacca cagacacaat atgtatgctt tttacctagc tggtagcata 3181 aataaaactg aatctcaaca taaaaaaaaa aaaaaaaaaa //