LOCUS BC002366 3235 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, mRNA (cDNA
clone MGC:8416 IMAGE:2820898), complete cds.
ACCESSION BC002366
VERSION BC002366.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3235)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3235)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002366.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41327770.
FEATURES Location/Qualifiers
source 1..3235
/db_xref="H-InvDB:HIT000030833"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8416 IMAGE:2820898"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3235
/gene="DDX23"
/gene_synonym="MGC8416"
/gene_synonym="prp28"
/gene_synonym="PRPF28"
/gene_synonym="U5-100K"
/db_xref="GeneID:9416"
/db_xref="HGNC:HGNC:17347"
CDS 51..2513
/gene="DDX23"
/gene_synonym="MGC8416"
/gene_synonym="prp28"
/gene_synonym="PRPF28"
/gene_synonym="U5-100K"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
/protein_id="AAH02366.1"
/db_xref="GeneID:9416"
/db_xref="HGNC:HGNC:17347"
/translation="MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDR
KRHRSRDRRRGGSRSRSRSRSKSAERERRHKERERDKERDRNKKDRDRDKDGHRRDKD
RKRSSLSPGRGKDFKSRKDRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAK
PKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERR
ERMERETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEW
DASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKE
QEEARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRS
WKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL
VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISR
EDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKI
LEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRP
AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAK
SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYD
MAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANH
PDAQHKPGTILTKKRREETIFA"
BASE COUNT 891 a 768 c 934 g 642 t
ORIGIN
1 cgacggctcc gcgacgttga ggccgcgttg ggcggttcag actcagggtg atggcaggag
61 agctggctga caaaaaggac cgtgatgcat caccttccaa ggaggaaagg aagcgatcac
121 ggactcctga cagagagcgg gatagagacc gggaccggaa gtcttcccca tctaaagata
181 gaaagcggca tcgttcaagg gatagacgtc gaggaggcag ccgttctcgc tctcgttccc
241 gttccaaatc tgcagaaaga gaacgacggc acaaagaacg agaacgagat aaggagcggg
301 atcggaataa gaaggaccga gatcgagaca aggatgggca cagacgggac aaggaccgta
361 aacgatccag cttatctcct ggtcgaggaa aagactttaa atctcggaag gacagagact
421 ctaagaagga tgaagaggat gaacatggtg ataagaagcc taaggcccag ccattatccc
481 tggaggagct tctggccaag aaaaaggctg aggaagaagc tgaggctaag cccaagttcc
541 tctctaaagc agaacgagag gctgaagctc taaagcgacg gcagcaggag gtggaagagc
601 ggcagaggat gcttgaagaa gagaggaaga aaaggaaaca gttccaagac ttgggcagga
661 agatgttgga agatcctcag gaacgggaac gtcgggaacg cagggagagg atggaacggg
721 agaccaatgg aaatgaggat gaggaagggc ggcagaagat ccgggaagag aaggataaga
781 gcaaggaact gcatgccatt aaggagcgtt acctgggtgg catcaaaaag cggcgccgaa
841 cgagacatct caatgaccgg aaatttgttt ttgagtggga tgcatctgag gacacatcca
901 ttgactacaa ccccctgtac aaagaacggc accaggtgca gttgttaggg cgaggcttca
961 ttgcaggcat tgacctcaag cagcagaagc gagagcagtc acgtttctat ggagacctaa
1021 tggagaagag gcgaaccctg gaagaaaagg agcaggagga ggcaagactc cgcaaacttc
1081 gtaagaagga agccaagcag cgctgggatg atcgtcattg gtctcagaaa aagttagatg
1141 agatgacgga cagggactgg cggatcttcc gtgaggacta cagcatcacc accaaaggtg
1201 gcaagatccc caatcccatc cgatcctgga aagactcttc tctgccccca cacatcttgg
1261 aggtcattga taagtgtggc tacaaggaac caacacctat acagcgtcag gcaattccca
1321 ttgggctaca gaatcgtgac atcattggtg tggctgagac tggcagtggc aagacagcag
1381 ccttcctcat ccctctgctg gtctggatca ccacacttcc caaaattgac aggatcgaag
1441 agtcagacca aggcccttat gccatcatcc tggctcccac ccgtgagttg gctcaacaga
1501 ttgaggaaga gaccatcaag tttgggaaac cgctaggtat ccgcactgtg gctgtcattg
1561 gtggcatctc cagagaagac cagggcttca ggctgcgcat gggttgtgag attgtgattg
1621 ctacccctgg gcgtttgatt gatgtgctgg agaaccgcta cctggtgctg agccgctgta
1681 cctatgtggt tctggatgag gcagatagga tgattgacat gggctttgag ccagatgtcc
1741 agaagatcct ggagcacatg cctgtcagca accagaagcc agacacggat gaggctgagg
1801 accctgagaa gatgctggcc aactttgagt cgggaaaaca taagtaccgc caaacagtca
1861 tgttcacggc caccatgccc ccagcggtgg agcgtctggc caggagctat cttcggcgac
1921 ctgctgtggt gtacattggc tccgcaggca agccccatga gcgtgtggaa cagaaggtct
1981 tcctcatgtc agagtcagaa aagaggaaaa agctgctggc aatcttggag caaggctttg
2041 acccacccat cattattttt gtcaaccaga agaagggctg cgacgtgttg gccaaatccc
2101 tggagaagat ggggtacaat gcttgcacac tgcacggtgg aaaaggccag gagcagcgag
2161 agtttgcgtt gtccaacctc aaggctgggg ccaaggatat tttggtggct acagatgtgg
2221 ctggtcgtgg tattgacatc caagatgtgt ctatggttgt caactatgat atggccaaaa
2281 atattgaaga ttacatccac cgcattggcc gcacgggacg agcaggcaag agtggggtgg
2341 ccatcacctt cctcacaaaa gaggactctg ctgtgttcta cgagctgaag caagctatcc
2401 tggaaagccc agtgtcttcc tgtccccccg aactagccaa ccacccagat gcccagcata
2461 agccaggcac catcctcacc aagaagcgcc gggaagagac catctttgcc tgacacagca
2521 ctcttcctgt gggctgaggg catctccaaa gctgcctgat gcctgttttt cagaaccctc
2581 acatccctct ttccaggtcc tcactcttgg gatatggggg cttaggaaaa caatccaact
2641 ccctagccca gaccctcagg tcaggaggcc tgcgtgtggg gctgcaaaag gagaggacga
2701 cgctgtcgga ggcagggaga gcaaattacc acagcttctt ggcccagttc tgcccttctt
2761 tgctttggga ttgcactggg ccatcagctc atgccaggct atgggggcag ccagttggca
2821 ttgctcccca gactgaacag aaacctggcc gccggatggg acctcctttg gcacagactt
2881 gactgtgtaa ctgcataaac tgcagtagca tcattgccct agatgcccca ggagacctgg
2941 caccatgagg attacagaca gtggaatctt actgtcatct ggacagctgt tttcctgttt
3001 ggatggtaaa ggaagttgag agtctttaga cctgtgcaca gccccgcacc aaggggtgct
3061 gtatgctcta ggcatcccct cccccagggg attttctaag tagatggggg gacacggtga
3121 actggctgtg tccatctttg tcactgagtg aaatctctgt tttctattct ctgagaagat
3181 aagtttgtat gttctgagaa taaatacatg aatattaaaa aaaaaaaaaa aaaaa
//