LOCUS BC002365 1325 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) 26S subunit,
non-ATPase, 4, mRNA (cDNA clone MGC:8410 IMAGE:2820813), complete
cds.
ACCESSION BC002365
VERSION BC002365.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1325)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1325)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC002365.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: d Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5292160.
FEATURES Location/Qualifiers
source 1..1325
/db_xref="H-InvDB:HIT000030832"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8410 IMAGE:2820813"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1325
/gene="PSMD4"
/gene_synonym="AF"
/gene_synonym="AF-1"
/gene_synonym="ASF"
/gene_synonym="MCB1"
/gene_synonym="pUB-R5"
/gene_synonym="Rpn10"
/gene_synonym="S5A"
/db_xref="GeneID:5710"
/db_xref="HGNC:HGNC:9561"
/db_xref="MIM:601648"
CDS 13..1146
/gene="PSMD4"
/gene_synonym="AF"
/gene_synonym="AF-1"
/gene_synonym="ASF"
/gene_synonym="MCB1"
/gene_synonym="pUB-R5"
/gene_synonym="Rpn10"
/gene_synonym="S5A"
/codon_start=1
/product="proteasome (prosome, macropain) 26S subunit,
non-ATPase, 4"
/protein_id="AAH02365.1"
/db_xref="GeneID:5710"
/db_xref="HGNC:HGNC:9561"
/db_xref="MIM:601648"
/translation="MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSN
PENNVGLITLANDCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQG
KNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTL
NGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELAL
ALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLP
DLSSMTEEEQIAYAMQMSLQGAEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEF
LQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEDKK"
BASE COUNT 393 a 294 c 374 g 264 t
ORIGIN
1 gaaggtggca agatggtgtt ggaaagcact atggtgtgtg tggacaacag tgagtatatg
61 cggaatggag acttcttacc caccaggctg caggcccagc aggatgctgt caacatagtt
121 tgtcattcaa agacccgcag caaccctgag aacaacgtgg gccttatcac actggctaat
181 gactgtgaag tgctgaccac actcacccca gacactggcc gtatcctgtc caagctacat
241 actgtccaac ccaagggcaa gatcaccttc tgcacgggca tccgcgtggc ccatctggct
301 ctgaagcacc gacaaggcaa gaatcacaag atgcgcatca ttgcctttgt gggaagccca
361 gtggaggaca atgagaagga tctggtgaaa ctggctaaac gcctcaagaa ggagaaagta
421 aatgttgaca ttatcaattt tggggaagag gaggtgaaca cagaaaagct gacagccttt
481 gtaaacacgt tgaatggcaa agatggaacc ggttctcatc tggtgacagt gcctcctggg
541 cccagtttgg ctgatgctct catcagttct ccgattttgg ctggtgaagg tggtgccatg
601 ctgggtcttg gtgccagtga ctttgaattt ggagtagatc ccagtgctga tcctgagctg
661 gccttggccc ttcgtgtatc tatggaagag cagcggcagc ggcaggagga ggaggcccgg
721 cgggcagctg cagcttctgc tgctgaggcc gggattgcta cgactgggac tgaagactca
781 gacgatgccc tgctgaagat gaccatcagc cagcaagagt ttggccgcac tgggcttcct
841 gacctaagca gtatgactga ggaagagcag attgcttatg ccatgcagat gtccctgcag
901 ggagcagagt ttggccaggc ggaatcagca gacattgatg ccagctcagc tatggacaca
961 tctgagccag ccaaggagga ggatgattac gacgtgatgc aggaccccga gttccttcag
1021 agtgtcctag agaacctccc aggtgtggat cccaacaatg aagccattcg aaatgctatg
1081 ggctccctgg cctcccaggc caccaaggac ggcaagaagg acaagaagga ggaagacaag
1141 aagtgagact ggagggaaag ggtagctgag tctgcttagg ggactgcatg ggaagcacgg
1201 aatatagggt tagatgtgtg ttatctgtaa ccattacagc ctaaataaag cttggcaact
1261 tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1321 aaaaa
//