LOCUS BC002338 1459 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1,
mRNA (cDNA clone MGC:8338 IMAGE:2819505), complete cds.
ACCESSION BC002338
VERSION BC002338.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1459)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1459)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002338.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: a Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18375500.
FEATURES Location/Qualifiers
source 1..1459
/db_xref="H-InvDB:HIT000030809"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8338 IMAGE:2819505"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1459
/gene="APEX1"
/gene_synonym="APE"
/gene_synonym="APE1"
/gene_synonym="APEN"
/gene_synonym="APX"
/gene_synonym="HAP1"
/gene_synonym="REF-1"
/gene_synonym="REF1"
/db_xref="GeneID:328"
/db_xref="HGNC:HGNC:587"
/db_xref="MIM:107748"
CDS 218..1174
/gene="APEX1"
/gene_synonym="APE"
/gene_synonym="APE1"
/gene_synonym="APEN"
/gene_synonym="APX"
/gene_synonym="HAP1"
/gene_synonym="REF-1"
/gene_synonym="REF1"
/codon_start=1
/product="APEX nuclease (multifunctional DNA repair
enzyme) 1"
/protein_id="AAH02338.1"
/db_xref="GeneID:328"
/db_xref="HGNC:HGNC:587"
/db_xref="MIM:107748"
/translation="MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPAL
YEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSEN
KLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVA
EFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEI
DLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSK
NVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL"
BASE COUNT 409 a 344 c 374 g 332 t
ORIGIN
1 gaggagctag gctgccatcg ggccggtgca gatacggggt tgctcttttg ctcataagag
61 gggcttcgct ggcagtctga acggcaagct tgagtcagga cccttaatta agatcctcaa
121 ttggctggag ggcagatctc gcgagtaggg caacgcggta aaaatattgc ttcggtgggt
181 gacgcggtac agctgcccaa gggcgttcgt aacgggaatg ccgaagcgtg ggaaaaaggg
241 agcggtggcg gaagacgggg atgagctcag gacagagcca gaggccaaga agagtaagac
301 ggccgcaaag aaaaatgaca aagaggcagc aggagagggc ccagccctgt atgaggaccc
361 cccagatcag aaaacctcac ccagtggcaa acctgccaca ctcaagatct gctcttggaa
421 tgtggatggg cttcgagcct ggattaagaa gaaaggatta gattgggtaa aggaagaagc
481 cccagatata ctgtgccttc aagagaccaa atgttcagag aacaaactac cagctgaact
541 tcaggagctg cctggactct ctcatcaata ctggtcagct ccttcggaca aggaagggta
601 cagtggcgtg ggcctgcttt cccgccagtg cccactcaaa gtttcttacg gcataggcga
661 ggaggagcat gatcaggaag gccgggtgat tgtggctgaa tttgactcgt ttgtgctggt
721 aacagcatat gtacctaatg caggccgagg tctggtacga ctggagtacc ggcagcgctg
781 ggatgaagcc tttcgcaagt tcctgaaggg cctggcttcc cgaaagcccc ttgtgctgtg
841 tggagacctc aatgtggcac atgaagaaat tgaccttcgc aaccccaagg ggaacaaaaa
901 gaatgctggc ttcacgccac aagagcgcca aggcttcggg gaattactgc aggctgtgcc
961 actggctgac agctttaggc acctctaccc caacacaccc tatgcctaca ccttttggac
1021 ttatatgatg aatgctcgat ccaagaatgt tggttggcgc cttgattact ttttgttgtc
1081 ccactctctg ttacctgcat tgtgtgacag caagatccgt tccaaggccc tcggcagtga
1141 tcactgtcct atcaccctat acctagcact gtgacaccac ccctaaatca ctttgagcct
1201 gggaaataag ccccctcaac taccattcct tctttaaaca ctcttcagag aaatctgcat
1261 tctatttctc atgtataaaa ctaggaatcc tccaaccagg ctcctgtgat agagttcttt
1321 taagcccaag attttttatt tgagggtttt ttgtttttta aaaaaaaatt gaacaaagac
1381 tactaatgac tttgtttgaa ttatccacat gaaaataaag agccatagtt tcaaaaaaaa
1441 aaaaaaaaaa aaaaaaaaa
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