LOCUS BC001954 2345 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PRP3 pre-mRNA processing factor 3 homolog (S.
cerevisiae), mRNA (cDNA clone MGC:4388 IMAGE:2905308), complete
cds.
ACCESSION BC001954
VERSION BC001954.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2345)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2345)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758555.
FEATURES Location/Qualifiers
source 1..2345
/db_xref="H-InvDB:HIT000030780"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4388 IMAGE:2905308"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2345
/gene="PRPF3"
/gene_synonym="HPRP3"
/gene_synonym="HPRP3P"
/gene_synonym="PRP3"
/gene_synonym="Prp3p"
/db_xref="GeneID:9129"
/db_xref="HGNC:HGNC:17348"
/db_xref="MIM:607301"
CDS 58..2109
/gene="PRPF3"
/gene_synonym="HPRP3"
/gene_synonym="HPRP3P"
/gene_synonym="PRP3"
/gene_synonym="Prp3p"
/codon_start=1
/product="PRP3 pre-mRNA processing factor 3 homolog (S.
cerevisiae)"
/protein_id="AAH01954.1"
/db_xref="GeneID:9129"
/db_xref="HGNC:HGNC:17348"
/db_xref="MIM:607301"
/translation="MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDK
KKAADHLKPFLDDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEIS
KESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQL
SFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLA
LKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTH
RMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGK
FEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDS
YIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRR
QTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQ
KAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQ
LYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAV
KKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLEST
D"
BASE COUNT 740 a 527 c 579 g 499 t
ORIGIN
1 gtttgtgagg tgtagtattg agtcctgttt gagctattgt tctctttttc ctgaaaaatg
61 gcactgtcaa agagggagct ggatgagctg aaaccatgga tagagaagac agtgaagagg
121 gtcctgggtt tctcagagcc tacggtggtc acagcagcat tgaactgtgt ggggaagggc
181 atggacaaga agaaggcagc cgatcatctg aaaccttttc ttgatgattc tactctccga
241 tttgtggaca aactgtttga ggctgtggag gaaggccgaa gctctaggca ttccaagtct
301 agcagtgaca ggagcagaaa acgagagcta aaggaggtgt ttggtgatga ctctgagatc
361 tctaaagaat catcaggagt aaagaagcga cgaatacccc gttttgagga ggtggaagaa
421 gagccagagg tgatccctgg gcctccatca gagagccctg gcatgctgac taagctccag
481 atcaaacaga tgatggaggc agcaacacga caaatcgagg agaggaaaaa acagctgagc
541 ttcattagcc cccctacacc tcagccaaag actccttctt cctcccaacc agaacgactt
601 cctattggca acactattca gccctcccag gctgccactt tcatgaatga tgccattgag
661 aaggcaagga aagcagctga actgcaagct cgaatccaag cccagctggc actgaagcca
721 ggactcatcg gcaatgccaa catggtgggc ctggctaatc tccatgccat gggcattgct
781 cccccgaagg tggagttaaa agaccaaacg aaacctacac cactgatcct ggatgagcaa
841 gggcgcactg tagatgcaac aggcaaggag attgagctga cacaccgcat gcctactctg
901 aaagccaata ttcgtgctgt gaagagggaa caattcaagc aacaactaaa ggaaaagcca
961 tcagaagaca tggaatccaa tacctttttt gacccccgag tctccattgc cccttcccag
1021 cgccagagac gcacttttaa attccatgac aagggcaaat ttgagaagat tgctcagcga
1081 ttacggacaa aggctcaact ggagaagcta caggcagaga tttcacaagc agctcgaaaa
1141 acaggcatcc atacttcgac taggcttgcc ctcattgctc ctaagaagga gctaaaggaa
1201 ggagatattc ctgaaattga gtggtgggac tcttacataa tccccaatgg ctttgatctt
1261 acagaggaaa atcccaagag agaagattat tttggaatca caaatcttgt tgaacatcca
1321 gcccagctca atcctccagt tgacaatgac acaccagtta ctctgggagt atatcttacc
1381 aagaaggaac agaaaaaact tcggagacaa acaaggaggg aagcacagaa ggaactacaa
1441 gaaaaagtca ggctgggcct gatgcctcct ccagaaccca aagtgagaat ttctaatttg
1501 atgcgagtat taggaacaga agctgttcaa gaccccacga aggtagaagc ccacgtcaga
1561 gctcagatgg caaaaagaca gaaagcgcat gaagaggcca acgctgcccg aaaactcaca
1621 gcagaacaga gaaaggtcaa gaaaattaaa aagcttaaag aagacatttc acagggggta
1681 cacatatctg tatatagagt tcgaaatttg agcaacccag ccaagaagtt caagattgaa
1741 gccaatgctg ggcaactgta cctgacaggg gtggtggtac tgcacaagga tgtcaacgtg
1801 gtagtagtgg aagggggccc caaggcccag aagaaattta agcgtcttat gctgcatcgg
1861 ataaagtggg atgaacagac atctaacaca aagggagatg atgatgagga gtctgatgag
1921 gaagctgtga agaaaaccaa caaatgtgta ctagtctggg agggtacagc caaagaccgg
1981 agctttggag agatgaagtt taaacagtgt cctacagaga acatggctcg tgagcatttc
2041 aaaaagcatg gggctgaaca ctactgggac cttgcgctga gtgaatctgt gttagagtcc
2101 actgattgag actactgcaa gcccttgcct ctcctccctt gcctttgtct cttcagtcct
2161 ctcacttatt ctatttccca accccctccc acttgtttgt gtgatctcag aactgtgcca
2221 agcagacact gggacaaagg gagaatatct tgctcccctc ctgagtcagc ctggtgttgc
2281 cctttattcc ccttatgtgc atatgattaa agagttattt ttaaaaaaaa aaaaaaaaaa
2341 aaaaa
//