LOCUS BC001896 1239 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens tubulin, beta, mRNA (cDNA clone IMAGE:3544415),
partial cds.
ACCESSION BC001896
VERSION BC001896.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1239)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1239)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: h Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34452716.
FEATURES Location/Qualifiers
source 1..1239
/db_xref="H-InvDB:HIT000086108"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3544415"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1239
/gene="TUBB"
/gene_synonym="M40"
/gene_synonym="MGC16435"
/gene_synonym="OK/SW-cl.56"
/gene_synonym="TUBB1"
/gene_synonym="TUBB5"
/db_xref="GeneID:203068"
/db_xref="HGNC:HGNC:20778"
/db_xref="IMGT/GENE-DB:20778"
/db_xref="MIM:191130"
CDS <1..1023
/gene="TUBB"
/gene_synonym="M40"
/gene_synonym="MGC16435"
/gene_synonym="OK/SW-cl.56"
/gene_synonym="TUBB1"
/gene_synonym="TUBB5"
/codon_start=1
/product="TUBB protein"
/protein_id="AAH01896.1"
/db_xref="GeneID:203068"
/db_xref="HGNC:HGNC:20778"
/db_xref="IMGT/GENE-DB:20778"
/db_xref="MIM:191130"
/translation="HYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMG
TLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA
LYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLH
FFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMS
MKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKR
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGE
EAEEEA"
BASE COUNT 291 a 360 c 310 g 278 t
ORIGIN
1 cactacacag agggcgccga gctggttgat tctgtcctgg atgtggtacg gaaggaggca
61 gagagctgtg actgcctgca gggcttccag ctgacccact cactgggcgg gggcacaggc
121 tctggaatgg gcactctcct tatcagcaag atccgagaag aataccctga tcgcatcatg
181 aataccttca gtgtggtgcc ttcacccaaa gtgtctgaca ccgtggtcga gccctacaat
241 gccaccctct ccgtccatca gttggtagag aatactgatg agacctattg cattgacaac
301 gaggccctct atgatatctg cttccgcact ctgaagctga ccacaccaac ctacggggat
361 ctgaaccacc ttgtctcagc caccatgagt ggtgtcacca cctgcctccg tttccctggc
421 cagctcaatg ctgacctccg caagttggca gtcaacatgg tccccttccc acgtctccat
481 ttctttatgc ctggctttgc ccctctcacc agccgtggaa gccagcagta tcgagctctc
541 acagtgccgg aactcaccca gcaggtcttc gatgccaaga acatgatggc tgcctgtgac
601 ccccgccacg gccgatacct caccgtggct gctgtcttcc gtggtcggat gtccatgaag
661 gaggtcgatg agcagatgct taacgtgcag aacaagaaca gcagctactt tgtggaatgg
721 atccccaaca atgtcaagac agccgtctgt gacatcccac ctcgtggcct caagatggca
781 gtcaccttca ttggcaatag cacagccatc caggagctct tcaagcgcat ctcggagcag
841 ttcactgcca tgttccgccg gaaggccttc ctccactggt acacaggcga gggcatggac
901 gagatggagt tcaccgaggc tgagagcaac atgaacgacc tcgtctctga gtatcagcag
961 taccaggatg ccaccgcaga agaggaggag gatttcggtg aggaggccga agaggaggcc
1021 taaggcagag cccccatcac ctcaggcttc tcagttccct tagccgtctt actcaactgc
1081 ccctttcctc tccctcagaa tttgtgtttg ctgcctctat cttgtttttt gttttttctt
1141 ctgggggggg gtctagaaca gtgcctggca catagtaggc gctcaataaa tacttgtttg
1201 ttgaaaaaaa aaaaaaaaaa aaaaaaaaaa aacctcggg
//