LOCUS BC001862 1463 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 48, mRNA (cDNA clone
MGC:4827 IMAGE:3603763), complete cds.
ACCESSION BC001862
VERSION BC001862.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1463)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1463)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC001862.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: d Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147361.
FEATURES Location/Qualifiers
source 1..1463
/db_xref="H-InvDB:HIT000030703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4827 IMAGE:3603763"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1463
/gene="TRIM48"
/gene_synonym="MGC4827"
/gene_synonym="RNF101"
/db_xref="GeneID:79097"
/db_xref="HGNC:HGNC:19021"
CDS 135..761
/gene="TRIM48"
/gene_synonym="MGC4827"
/gene_synonym="RNF101"
/codon_start=1
/product="tripartite motif-containing 48"
/protein_id="AAH01862.1"
/db_xref="GeneID:79097"
/db_xref="HGNC:HGNC:19021"
/translation="MNSGISQVFQRELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQ
DIPILTQCFECIKTIQQRNLKTNIRLKKMASLARKASLWLFLSSEEQMCGIHRETKKM
FCEVDRSLLCLLCSSSQEHRYHRHCPAEWAAEEHWEKLLKKMQSLWEKACENQRNLNV
ETTRISHWKAFGDILYRSESVLLHMPQPLNLALRAGPITGLRDRLNQF"
BASE COUNT 421 a 331 c 323 g 388 t
ORIGIN
1 cttagaggga gctgtgtttt ggtgacctct gaaactcagt actgcagcga atgagctcct
61 gaccttgagg agtacttaac agaattatgt ctcgaagaat cattgtggga acccttcaaa
121 gaacccagcg aaacatgaat tctggaatct cgcaagtctt ccagagggaa ctcacctgcc
181 ccatctgcat gaactacttc atagacccgg tcaccataga ctgtgggcac agcttttgca
241 ggccctgttt ctacctcaac tggcaagaca tcccaattct tactcagtgc tttgaatgca
301 taaagacaat acagcagaga aacctcaaaa ctaacattcg attgaagaag atggcttccc
361 ttgccagaaa agccagtctc tggctattcc tgagctctga ggagcaaatg tgtggcattc
421 acagggagac aaagaagatg ttctgtgaag tggacaggag cctgctctgt ttgctgtgct
481 ccagctctca ggagcaccgg tatcacagac actgtcccgc tgagtgggct gctgaggaac
541 actgggagaa gctgttaaag aaaatgcagt ctttatggga aaaagcttgt gaaaatcaga
601 gaaacctgaa tgtggaaacc accagaatca gccactggaa ggcttttgga gacatattat
661 acaggagtga gtccgtgctg ctgcacatgc cccagcctct gaatctagcg ctcagggcag
721 ggcccatcac tggactgagg gacaggctca accaattctg agtggatatt actctgcatc
781 acaatgaagc caacagtcat atcttccgat gtggagattt gagaagcatt tgtattggat
841 gtgaccgtca aaatccgccc catatcactg caacacctac aagttttctt gcatggggtg
901 ctcagacttt cacctctggc aaatattact gggaggtcca tgtgggggac tcttggaatt
961 gggcttttgg tgtctgtaat aagtattgga aagggaagaa tcagaatggc aatatatatg
1021 gagaggaggg actctttagt cttgggtgtg ttaagaacga cattcagtgc agtctcttta
1081 ccacctcccc aattacactg cagtatgtcc caagacctac caaccatgta gaattattcc
1141 tggattgtga agctagaact gtgagcttcg ttgatgttag tcaaagctcc cctatataca
1201 ccatccctaa ttgctccttc tcacctcctc tcagacctat ctttttctgt attctcctct
1261 gaccagagac aaatcagaaa tgtgttcatc tgctgtggga acccctttat cccagaaagc
1321 cctcttcctt gtgccttatc aaacaggaca aataggttcg gttttatgtc ttgaattgca
1381 ttctaatgtt attaaaactc atttattgtg ttactattaa atgtagtaaa aacactaaaa
1441 gtataaaaaa aaaaaaaaaa aaa
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