LOCUS BC001800 2702 bp mRNA linear HUM 22-FEB-2007 DEFINITION Homo sapiens orthopedia homeobox, mRNA (cDNA clone MGC:3161 IMAGE:3354882), complete cds. ACCESSION BC001800 VERSION BC001800.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2702) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2702) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-JAN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 6 Row: f Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497624. FEATURES Location/Qualifiers source 1..2702 /db_xref="H-InvDB:HIT000030661" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3161 IMAGE:3354882" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2702 /gene="OTP" /db_xref="GeneID:23440" /db_xref="HGNC:HGNC:8518" /db_xref="MIM:604529" CDS 149..1126 /gene="OTP" /codon_start=1 /product="orthopedia homeobox" /protein_id="AAH01800.1" /db_xref="GeneID:23440" /db_xref="HGNC:HGNC:8518" /db_xref="MIM:604529" /translation="MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGD LAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQ KQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK KRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVS QLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGM VPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT" BASE COUNT 543 a 896 c 670 g 593 t ORIGIN 1 cccccttttt aaccacaaac cgaattttct ttcatttagg tgatctatat atatctatat 61 cgtatagctt atagcttata tctattttaa ataacttaaa gccgctaaaa tttggggggg 121 aacagctttc gccctggagc ggtgcgcgat gctgtctcat gccgacctcc tggacgccag 181 gctaggtatg aaagatgccg ccgagcttct gggccaccgg gaggcggtga agtgtaggct 241 gggcgtgggg ggctccgacc ccgggggcca tccgggggac ctggcgccca actctgaccc 301 agtggaggga gccactctgc tgcccgggga ggacatcacc acagtgggct ctactccggc 361 ctcgctggcg gtgagcgcca aagacccgga caagcagccc gggccccagg gcggcccgaa 421 ccccagccaa gccggccagc agcagggcca acagaagcag aagcgccacc ggacgcgctt 481 cacccccgca cagctcaacg agttggagag gagcttcgcc aagactcact accccgacat 541 ctttatgcgt gaggagctgg cactgcgtat cgggctgacc gagtcccgag tgcaggtctg 601 gttccagaac cgacgcgcca agtggaagaa gcgcaagaag acgaccaacg tgttccgtgc 661 gcccggcaca ctgctgccca cgccaggcct gcctcagttc ccgtcggctg ccgccgccgc 721 tgccgccgcc atgggcgaca gcctgtgctc tttccacgcc aacgacaccc gctgggcggc 781 ggccgccatg cctggcgtgt cacagctgcc tctgccgccg gcgctgggca ggcagcaggc 841 catggcgcag tcgctgtccc agtgcagcct ggcggccggt ccgccgccca actccatggg 901 cctgtccaac agcctggcgg gttccaacgg cgcggggctg cagtcgcacc tctaccagcc 961 cgccttcccc ggcatggtgc ccgcctccct ccccggcccc agcaacgtct ccggttcgcc 1021 ccagctctgc agctccccgg acagcagcga cgtgtggcgg ggcaccagca tcgcctccct 1081 ccgccgcaag gcgctagagc acacagtctc tatgagcttc acttaatgca gccgcgcccc 1141 ggcccgctcc gcccccagca ccgccccggg ggccgccccg aggcccttcc ggcgcgcacc 1201 cggaccccgg cgccctgccc cgtcccgccc cggccttcgc cccgtctcgt ttcgtcctcg 1261 cctctctcct ccactcgctc gggctcaccc caagccccag cccgcgaggc ctcccctccg 1321 cctgatttcg atcgcccgcg gtcccccgtc tcccggccgc ccctcttccc ttcccaccca 1381 gctgcgccct cggctcggtc tccagcgcct cagcccaccc ttcccgccac cctggcctcc 1441 ctgctggcgc tggccgtgct cgcgccctcc tcctggcctt ctgacgggcg gcgttcccac 1501 ccacaccttc gacgcgacgc ctacgacccc cctcgcccgc cgcctcccct ccggtcccct 1561 ctttccccac acttcgcgac cctcctcccg cgcccggcaa aaagtatcct tcccgccatt 1621 ttacgtacca gggagtcgac tcaggatctg aaatcagaca ccaatggact ggtttgtggg 1681 cagaaacaca cacactcgca ctctcgctca cgctcagacg ctacacacgc gcgcgcacag 1741 acacggtgca cctaggtcac acacggacgt gttcaaggga cagcacaatg ttagggattt 1801 ttgtcttaaa ggaggacaag cattgctacc aaccgcctca tctgagggcc caactgatat 1861 gatttgattt atccttgtac tctccaagct cctgtctttc tttcctctcc caccacgcta 1921 cccttgccca gtccacccag tcacatccgt gcagccctct cttggcttgc aagataacgc 1981 ttttattttt attttatctt attttcattt tcttaagcac aactgtgtga gagtgtagaa 2041 gggaaggctt ctcaggagga acgtgacagt ggattgggtg gctggagtag actaaagcag 2101 tcatgtgacg aggaagaggt gatctgaccc attttgataa gtctttataa ggaagaataa 2161 aataaacgtg taagcaaaat tttcttttgt aaaagcaaaa gccacatctc ttttctggat 2221 ccttcaggac tggggtttgt ttgcttcctt ttctgtttct gtcttctcgc tgctctgtgc 2281 ccttggttgt tttgtggtgg tcctgtcgtc cctcgtgccc ctcggccacc tgctggcagc 2341 cgatgggggc actcggacat ctacaaccct gcaactttgt acagagaaac acaatcagct 2401 ctttctgcat gtgctggtca aatccaaacc cagagaacag aagcgctttc taagaatgaa 2461 caaatatgtg aaataggatg ttttgtgtag ataaagcatt cttgttacat actggtcaat 2521 ttgtgatatg ttttaactta atgtctgtgt ttatttatgg aattcggttt tcttaataaa 2581 tgtttgagct aatataaagc atattatttg acttttccgg acaagtttat atcaagttaa 2641 atgtaaatgg ataaaataaa atcattttca gtatgtgaaa aaaaaaaaaa aaaaaaaaaa 2701 aa //