LOCUS BC001749 2252 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens wingless-type MMTV integration site family, member 5B,
mRNA (cDNA clone MGC:2648 IMAGE:3528819), complete cds.
ACCESSION BC001749
VERSION BC001749.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2252)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2252)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: m Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17402920.
FEATURES Location/Qualifiers
source 1..2252
/db_xref="H-InvDB:HIT000030623"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2648 IMAGE:3528819"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2252
/gene="WNT5B"
/gene_synonym="MGC2648"
/db_xref="GeneID:81029"
/db_xref="HGNC:HGNC:16265"
/db_xref="MIM:606361"
CDS 184..1263
/gene="WNT5B"
/gene_synonym="MGC2648"
/codon_start=1
/product="wingless-type MMTV integration site family,
member 5B"
/protein_id="AAH01749.1"
/db_xref="GeneID:81029"
/db_xref="HGNC:HGNC:16265"
/db_xref="MIM:606361"
/translation="MPSLLLLFTAALLSSWAQLLTDANSWWSLALNPVQRPEMFIIGA
QPVCSQLPGLSPGQRKLCQLYQEHMAYIGEGAKTGIKECQHQFRQRRWNCSTADNASV
FGRVMQIGSRETAFTHAVSAAGVVNAISRACREGELSTCGCSRTARPKDLPRDWLWGG
CGDNVEYGYRFAKEFVDAREREKNFAKGSEEQGRVLMNLQNNEAGRRAVYKMADVACK
CHGVSGSCSLKTCWLQLAEFRKVGDRLKEKYDSAAAMRVTRKGRLELVNSRFTQPTPE
DLVYVDPSPDYCLRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYNQFKSVQVERC
HCKFHWCCFVRCKKCTEIVDQYICK"
BASE COUNT 493 a 617 c 689 g 453 t
ORIGIN
1 gaccattagc aggcacccag gcctgtcttt ggctcggaaa cggtggcccc caatgtagcc
61 tagtttgaac ctaggaactg caggaccaga gagattccac tggagcctga tggacgggtg
121 acagagggaa ccctactctg gaaactgtca gtcccagggc actggggagg gctgaggccg
181 accatgccca gcctgctgct gctgttcacg gctgctctgc tgtccagctg ggctcagctt
241 ctgacagacg ccaactcctg gtggtcatta gctttgaacc cggtgcagag acccgagatg
301 tttatcatcg gtgcccagcc cgtgtgcagt cagcttcccg ggctctcccc tggccagagg
361 aagctgtgcc aattgtacca ggagcacatg gcctacatag gggagggagc caagactggc
421 atcaaggaat gccagcacca gttccggcag cggcggtgga attgcagcac agcggacaac
481 gcatctgtct ttgggagagt catgcagata ggcagccgag agaccgcctt cacccacgcg
541 gtgagcgccg cgggcgtggt caacgccatc agccgggcct gccgcgaggg cgagctctcc
601 acctgcggct gcagccggac ggcgcggccc aaggacctgc cccgggactg gctgtggggc
661 ggctgtgggg acaacgtgga gtacggctac cgcttcgcca aggagtttgt ggatgcccgg
721 gagcgagaga agaactttgc caaaggatca gaggagcagg gccgggtgct catgaacctg
781 caaaacaacg aggccggtcg cagggctgtg tataagatgg cagacgtagc ctgcaaatgc
841 cacggcgtct cggggtcctg cagcctcaag acctgctggc tgcagctggc cgagttccgc
901 aaggtcgggg accggctgaa ggagaagtac gacagcgcgg ccgccatgcg cgtcacccgc
961 aagggccggc tggagctggt caacagccgc ttcacccagc ccaccccgga ggacctggtc
1021 tatgtggacc ccagccccga ctactgcctg cgcaacgaga gcacgggctc cctgggcacg
1081 cagggccgcc tctgcaacaa gacctcggag ggcatggatg gctgtgagct catgtgctgc
1141 gggcgtggct acaaccagtt caagagcgtg caggtggagc gctgccactg caagttccac
1201 tggtgctgct tcgtcaggtg taagaagtgc acggagatcg tggaccagta catctgtaaa
1261 tagcccggag ggcctgctcc cggccccccc tgcactctgc ctcacaaagg tctatattat
1321 ataaatctat ataaatctat tttatatttg tataagtaaa tgggtgggtg ctatacaatg
1381 gaaagatgaa aatggaaagg aagagcttat ttaagagacg ctggagatct ctgaggagtg
1441 gactttgctg gttctctcct cttggtgggt gggagacagg gctttttctc tccctctggc
1501 gaggactctc aggatgtagg gacttggaaa tatttactgt ctgtccacca cggcctggag
1561 gagggaggtt gtggttggat ggaggagatg atcttgtctg gaagtctaga gtctttgttg
1621 gttagaggac tgcctgtgat cctggccact aggccaagag gccctatgaa ggtggcggga
1681 actcagcttc aacctcgatg tcttcagggt cttgtccaga atgtagatgg gttccgtaag
1741 aggcctggtg ctctcttact ctttcatcca cgtgcacttg tgcggcatct gcagtttaca
1801 ggaacggctc cttccctaaa atgagaagtc caaggtcatc tctggcccag tgaccacaga
1861 gagatctgca cctcccggac ttcaggcctg cctttccagc gagaattctt catcctccac
1921 ggttcactag ctcctacctg aagaggaaag ggggccattt gacctgacat gtcaggaaag
1981 ccctaaactg aatgtttgcg cctgggctgc agaagccagg gtgcatgacc aggctgcgtg
2041 gacgttatac tgtcttcccc cacccccggg gaggggaagc ttgagctgct gctgtcactc
2101 ctccaccgag ggaggcctca caaaccacag gacgctgcaa cgggtcaggc tggcgggccc
2161 ggcgtgctca tcatctctgc cccaggtgta cggtttctct ctgacattaa atgcccttca
2221 tggaaaaaaa aaaaagaaaa aaaaaaaaaa aa
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