LOCUS BC001721 598 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens small nuclear ribonucleoprotein D1 polypeptide 16kDa, mRNA (cDNA clone MGC:2222 IMAGE:3355716), complete cds. ACCESSION BC001721 VERSION BC001721.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 598) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 598) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 6 Row: n Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28416941. FEATURES Location/Qualifiers source 1..598 /db_xref="H-InvDB:HIT000030601" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:2222 IMAGE:3355716" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..598 /gene="SNRPD1" /gene_synonym="HsT2456" /gene_synonym="SMD1" /db_xref="GeneID:6632" /db_xref="HGNC:HGNC:11158" /db_xref="MIM:601063" CDS 123..482 /gene="SNRPD1" /gene_synonym="HsT2456" /gene_synonym="SMD1" /codon_start=1 /product="small nuclear ribonucleoprotein D1 polypeptide 16kDa" /protein_id="AAH01721.1" /db_xref="GeneID:6632" /db_xref="HGNC:HGNC:11158" /db_xref="MIM:601063" /translation="MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVK MTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR GRGRGRGRGRGRGGPRR" BASE COUNT 187 a 99 c 164 g 148 t ORIGIN 1 cgcgctcttg acgtccggag cccctggagt aggcgcttcc ggccattcat actgcagtcg 61 gtcagtgttc ggttgaagga ttctgtgtgc tgtcgtaccc agagggtgac ggcgccgcta 121 ggatgaagct cgtgagattt ttgatgaaat tgagtcatga aactgtaacc attgaattga 181 agaacggaac acaggtccat ggaacaatca caggtgtgga tgtcagcatg aatacacatc 241 ttaaagctgt gaaaatgacc ctgaagaaca gagaacctgt acagctggaa acgctgagta 301 ttcgaggaaa taacattcgg tattttattc taccagacag tttacctctg gatacactac 361 ttgtggatgt tgaacctaag gtgaaatcta agaaaaggga agctgttgca ggaagaggca 421 gaggaagagg aagaggaaga ggacgtggcc gtggcagagg aagagggggt cctaggcgat 481 aatgtctctc aagatttcaa agtcatatga gatttgggat attttttgta caggttgtgt 541 ttgtttatgt cagtttttaa taaacataaa tgtgggacaa aaaaaaaaaa aaaaaaaa //