LOCUS BC001688 666 bp mRNA linear HUM 01-OCT-2003
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 4,
mRNA (cDNA clone IMAGE:2990059), partial cds.
ACCESSION BC001688
VERSION BC001688.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 666)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 666)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 1, 2003 this sequence version replaced BC001688.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: k Column: 18.
FEATURES Location/Qualifiers
source 1..666
/db_xref="H-InvDB:HIT000030577"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2990059"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..666
/gene="SLC39A4"
/gene_synonym="FLJ20327"
/gene_synonym="ZIP4"
/db_xref="GeneID:55630"
/db_xref="MIM:607059"
CDS <1..521
/gene="SLC39A4"
/gene_synonym="FLJ20327"
/gene_synonym="ZIP4"
/codon_start=3
/product="SLC39A4 protein"
/protein_id="AAH01688.2"
/db_xref="GeneID:55630"
/db_xref="MIM:607059"
/translation="EESPELLNPEPRRLSPELRLLPYMITLGDAVHNFADGLAVGAAF
ASSWKTGLATSLAVFCHELPHELGDFAALLHAGLSVRQALLLNLASALTAFAGLYVAL
AVGVSEESEAWILAVATGLFLYVALCDMLPAMLKVRDPRPWLLFLLHNVGLLGGWTVL
LLLSLYEDDITF"
misc_feature 69..431
/gene="SLC39A4"
/gene_synonym="FLJ20327"
/gene_synonym="ZIP4"
/note="Zip; Region: ZIP Zinc transporter. The ZIP family
consists of zinc transport proteins and many putative
metal transporters. The main contribution to this family
is from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although this
protein in not found within this family"
/db_xref="CDD:pfam02535"
BASE COUNT 130 a 226 c 186 g 124 t
ORIGIN
1 cggaggagag cccggagctg ctgaaccctg agcccaggag actgagccca gagttgaggc
61 tactgcccta tatgatcact ctgggcgacg ccgtgcacaa cttcgccgac gggctggccg
121 tgggcgccgc cttcgcgtcc tcctggaaga ccgggctggc cacctcgctg gccgtgttct
181 gccacgagtt gccacacgag ctgggggact tcgccgcctt gctgcacgcg gggctgtccg
241 tgcgccaagc actgctgctg aacctggcct ccgcgctcac ggccttcgct ggtctctacg
301 tggcactcgc ggttggagtc agcgaggaga gcgaggcctg gatcctggca gtggccaccg
361 gcctgttcct ctacgtagca ctctgcgaca tgctcccggc gatgttgaaa gtacgggacc
421 cgcggccctg gctcctcttc ctgctgcaca acgtgggcct gctgggcggc tggaccgtcc
481 tgctgctgct gtccctgtac gaggatgaca tcaccttctg ataccctgcc ctagtccccc
541 acctttgact taagatccca cacctcacaa acctacagcc cagaaaccag aagcccctat
601 agaggcccca gtcccaactc cagtaaagac actcttgtcc ttggaaaaaa aaaaaaaaaa
661 aaaaaa
//