LOCUS BC001666 3010 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae), mRNA (cDNA clone MGC:1852 IMAGE:2988165), complete
cds.
ACCESSION BC001666
VERSION BC001666.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3010)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3010)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC001666.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: d Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40807484.
FEATURES Location/Qualifiers
source 1..3010
/db_xref="H-InvDB:HIT000030560"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1852 IMAGE:2988165"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3010
/gene="PRPF6"
/gene_synonym="ANT-1"
/gene_synonym="hPrp6"
/gene_synonym="TOM"
/gene_synonym="U5-102K"
/db_xref="GeneID:24148"
/db_xref="HGNC:HGNC:15860"
CDS 47..2872
/gene="PRPF6"
/gene_synonym="ANT-1"
/gene_synonym="hPrp6"
/gene_synonym="TOM"
/gene_synonym="U5-102K"
/codon_start=1
/product="PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)"
/protein_id="AAH01666.1"
/db_xref="GeneID:24148"
/db_xref="HGNC:HGNC:15860"
/translation="MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPV
DDRHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEAD
AIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSI
PEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGL
NTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTD
LNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMK
GTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRV
LRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENAR
KVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ
DAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYA
LQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDV
PAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSV
KLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCP
HSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANT
LMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRK
ITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCA
VSKDIANWQKKIGDILRLVAGRIKNTF"
BASE COUNT 768 a 761 c 936 g 545 t
ORIGIN
1 cgctgcctca ttcctttcct tcctagcctt ggtcgtcgcc gccaccatga acaagaagaa
61 gaaaccgttc ctagggatgc ccgcgcccct cggctacgtg ccggggctgg gccggggcgc
121 cactggcttc accacgcggt cagacattgg gcccgcccgt gatgcaaatg accctgtgga
181 tgatcgccat gcacccccag gcaagagaac cgttggggac cagatgaaga aaaatcaggc
241 tgctgacgat gacgacgagg atctaaatga caccaattac gatgagttta atggctatgc
301 tgggagcctc ttctcaagtg gaccctacga gaaagatgat gaggaagcag atgctatcta
361 tgcagccctg gataaaagga tggatgaaag aagaaaagaa agacgggagc aaagggagaa
421 agaagaaata gagaaatatc gtatggaacg ccccaaaatc caacagcagt tctcagacct
481 caagaggaag ttggcagaag tcacagaaga agagtggctg agcatccccg aggttggcga
541 tgccagaaat aaacgtcagc ggaacccacg ctatgagaag ctgacccctg ttcctgacag
601 tttctttgcc aaacatttac agaccggaga gaaccatacc tcagtggatc cccgacaaac
661 tcaatttgga ggtcttaaca caccctatcc aggtggacta aacactccat acccaggtgg
721 aatgacgcca ggactgatga cacctggcac aggtgagctg gacatgagga agattggcca
781 agcgaggaac actctgatgg acatgaggct gagccaggtg tctgactccg tgagtggaca
841 gaccgtcgtt gaccccaaag gctacctgac ggatttaaat tccatgatcc cgacacacgg
901 aggagacatc aatgatatca agaaggcgcg actgctcctc aagtctgttc gggagacgaa
961 ccctcatcac ccgccagcct ggattgcatc agcccgcctg gaagaagtca ctgggaagct
1021 acaagtagct cggaacctta tcatgaaggg gacggagatg tgccccaaga gtgaagatgt
1081 ctggctggaa gcagccaggt tgcagcctgg ggacacagcc aaggccgtgg tagcccaagc
1141 tgtccgtcat ctcccacagt ctgtcaggat ttacatcaga gccgcagagc tggaaacgga
1201 cattcgtgca aagaagcggg ttcttcggaa agccctcgag catgttccaa actcggttcg
1261 cttgtggaaa gcagccgttg agctggaaga acctgaagat gctagaatca tgctgagccg
1321 agctgtggag tgctgcccca ccagcgtgga gctctggctt gctctggcaa ggctggagac
1381 ctatgaaaat gcccgcaagg tcttgaacaa ggcgcgggag aacattccta cagaccgaca
1441 tatctggatc acggctgcta agctggagga agccaatggg aacacgcaga tggtggagaa
1501 gatcatcgac cgagccatca cctcgctgcg ggccaacggt gtggagatca accgtgagca
1561 gtggatccag gatgccgagg aatgtgacag ggctgggagt gtggccacct gccaggccgt
1621 catgcgtgcc gtgattggga ttgggattga ggaggaagat cggaagcata cctggatgga
1681 ggatgctgac agttgtgtag cccacaatgc cctggagtgt gcacgagcca tctacgccta
1741 cgccctgcag gtgttcccca gcaagaagag tgtgtggctg cgcgccgcgt acttcgagaa
1801 gaaccatggc actcgggagt ccctggaagc actcctgcag agggctgtgg cccactgccc
1861 caaagcagag gtgctgtggc tcatgggcgc caagtccaag tggctggcag gggatgtgcc
1921 tgcagcaagg agcatcctgg ccctggcctt ccaggccaac cccaacagtg aggagatctg
1981 gctggcagcc gtgaagctgg agtccgagaa tgatgagtac gagcgggccc ggaggctgct
2041 ggccaaggcg cggagcagtg cccccaccgc ccgggtgttc atgaagtctg tgaagctgga
2101 gtgggtgcaa gacaacatca gggcagccca agatctgtgc gaggaggccc tgcggcacta
2161 tgaggacttc cccaagctgt ggatgatgaa ggggcagatc gaggagcaga aggagatgat
2221 ggagaaggcg cgggaagcct ataaccaggg gttgaagaag tgtccccact ccacacccct
2281 gtggcttttg ctctctcggc tggaggagaa gattgggcag cttactcgag cacgggccat
2341 tttggaaaag tctcgtctga agaacccaaa gaaccctggg ctgtggttgg agtccgtgcg
2401 gctggagtac cgtgcggggc tgaagaacat cgcaaataca ctcatggcca aggcgctgca
2461 ggagtgcccc aactccggta tcctgtggtc tgaggccatc ttcctcgagg caaggcccca
2521 gaggaggacc aagagcgtgg atgccctgaa gaagtgtgag catgaccccc atgtgctcct
2581 ggccgtggcc aagctgtttt ggagtcagcg gaagatcacc aaggccaggg agtggttcca
2641 ccgcactgtg aagattgact cggacctggg ggatgcctgg gccttcttct acaagtttga
2701 gctgcagcat ggcactgagg agcagcagga ggaggtgagg aagcgctgtg agagtgcaga
2761 gcctcggcat ggggagctgt ggtgcgccgt gtccaaggac atcgccaact ggcagaagaa
2821 gatcggggac atccttaggc tggtggccgg ccgcatcaag aacaccttct gattgagcgg
2881 ttgccatggc tggtctccgt ggggcagggt tgggccgcat gtggaagggc tttgagctgt
2941 gtcctccttc attaaaagtt tttatgtctc gtgtcagaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa
//