LOCUS BC001666 3010 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae), mRNA (cDNA clone MGC:1852 IMAGE:2988165), complete cds. ACCESSION BC001666 VERSION BC001666.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3010) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3010) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 8, 2003 this sequence version replaced BC001666.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 3 Row: d Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40807484. FEATURES Location/Qualifiers source 1..3010 /db_xref="H-InvDB:HIT000030560" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1852 IMAGE:2988165" /tissue_type="Colon, adenocarcinoma" /clone_lib="NIH_MGC_15" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3010 /gene="PRPF6" /gene_synonym="ANT-1" /gene_synonym="hPrp6" /gene_synonym="TOM" /gene_synonym="U5-102K" /db_xref="GeneID:24148" /db_xref="HGNC:HGNC:15860" CDS 47..2872 /gene="PRPF6" /gene_synonym="ANT-1" /gene_synonym="hPrp6" /gene_synonym="TOM" /gene_synonym="U5-102K" /codon_start=1 /product="PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)" /protein_id="AAH01666.1" /db_xref="GeneID:24148" /db_xref="HGNC:HGNC:15860" /translation="MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPV DDRHAPPGKRTVGDQMKKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEAD AIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSI PEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGL NTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTD LNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMK GTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRV LRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENAR KVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQ DAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYA LQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDV PAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSV KLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCP HSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANT LMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRK ITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCA VSKDIANWQKKIGDILRLVAGRIKNTF" BASE COUNT 768 a 761 c 936 g 545 t ORIGIN 1 cgctgcctca ttcctttcct tcctagcctt ggtcgtcgcc gccaccatga acaagaagaa 61 gaaaccgttc ctagggatgc ccgcgcccct cggctacgtg ccggggctgg gccggggcgc 121 cactggcttc accacgcggt cagacattgg gcccgcccgt gatgcaaatg accctgtgga 181 tgatcgccat gcacccccag gcaagagaac cgttggggac cagatgaaga aaaatcaggc 241 tgctgacgat gacgacgagg atctaaatga caccaattac gatgagttta atggctatgc 301 tgggagcctc ttctcaagtg gaccctacga gaaagatgat gaggaagcag atgctatcta 361 tgcagccctg gataaaagga tggatgaaag aagaaaagaa agacgggagc aaagggagaa 421 agaagaaata gagaaatatc gtatggaacg ccccaaaatc caacagcagt tctcagacct 481 caagaggaag ttggcagaag tcacagaaga agagtggctg agcatccccg aggttggcga 541 tgccagaaat aaacgtcagc ggaacccacg ctatgagaag ctgacccctg ttcctgacag 601 tttctttgcc aaacatttac agaccggaga gaaccatacc tcagtggatc cccgacaaac 661 tcaatttgga ggtcttaaca caccctatcc aggtggacta aacactccat acccaggtgg 721 aatgacgcca ggactgatga cacctggcac aggtgagctg gacatgagga agattggcca 781 agcgaggaac actctgatgg acatgaggct gagccaggtg tctgactccg tgagtggaca 841 gaccgtcgtt gaccccaaag gctacctgac ggatttaaat tccatgatcc cgacacacgg 901 aggagacatc aatgatatca agaaggcgcg actgctcctc aagtctgttc gggagacgaa 961 ccctcatcac ccgccagcct ggattgcatc agcccgcctg gaagaagtca ctgggaagct 1021 acaagtagct cggaacctta tcatgaaggg gacggagatg tgccccaaga gtgaagatgt 1081 ctggctggaa gcagccaggt tgcagcctgg ggacacagcc aaggccgtgg tagcccaagc 1141 tgtccgtcat ctcccacagt ctgtcaggat ttacatcaga gccgcagagc tggaaacgga 1201 cattcgtgca aagaagcggg ttcttcggaa agccctcgag catgttccaa actcggttcg 1261 cttgtggaaa gcagccgttg agctggaaga acctgaagat gctagaatca tgctgagccg 1321 agctgtggag tgctgcccca ccagcgtgga gctctggctt gctctggcaa ggctggagac 1381 ctatgaaaat gcccgcaagg tcttgaacaa ggcgcgggag aacattccta cagaccgaca 1441 tatctggatc acggctgcta agctggagga agccaatggg aacacgcaga tggtggagaa 1501 gatcatcgac cgagccatca cctcgctgcg ggccaacggt gtggagatca accgtgagca 1561 gtggatccag gatgccgagg aatgtgacag ggctgggagt gtggccacct gccaggccgt 1621 catgcgtgcc gtgattggga ttgggattga ggaggaagat cggaagcata cctggatgga 1681 ggatgctgac agttgtgtag cccacaatgc cctggagtgt gcacgagcca tctacgccta 1741 cgccctgcag gtgttcccca gcaagaagag tgtgtggctg cgcgccgcgt acttcgagaa 1801 gaaccatggc actcgggagt ccctggaagc actcctgcag agggctgtgg cccactgccc 1861 caaagcagag gtgctgtggc tcatgggcgc caagtccaag tggctggcag gggatgtgcc 1921 tgcagcaagg agcatcctgg ccctggcctt ccaggccaac cccaacagtg aggagatctg 1981 gctggcagcc gtgaagctgg agtccgagaa tgatgagtac gagcgggccc ggaggctgct 2041 ggccaaggcg cggagcagtg cccccaccgc ccgggtgttc atgaagtctg tgaagctgga 2101 gtgggtgcaa gacaacatca gggcagccca agatctgtgc gaggaggccc tgcggcacta 2161 tgaggacttc cccaagctgt ggatgatgaa ggggcagatc gaggagcaga aggagatgat 2221 ggagaaggcg cgggaagcct ataaccaggg gttgaagaag tgtccccact ccacacccct 2281 gtggcttttg ctctctcggc tggaggagaa gattgggcag cttactcgag cacgggccat 2341 tttggaaaag tctcgtctga agaacccaaa gaaccctggg ctgtggttgg agtccgtgcg 2401 gctggagtac cgtgcggggc tgaagaacat cgcaaataca ctcatggcca aggcgctgca 2461 ggagtgcccc aactccggta tcctgtggtc tgaggccatc ttcctcgagg caaggcccca 2521 gaggaggacc aagagcgtgg atgccctgaa gaagtgtgag catgaccccc atgtgctcct 2581 ggccgtggcc aagctgtttt ggagtcagcg gaagatcacc aaggccaggg agtggttcca 2641 ccgcactgtg aagattgact cggacctggg ggatgcctgg gccttcttct acaagtttga 2701 gctgcagcat ggcactgagg agcagcagga ggaggtgagg aagcgctgtg agagtgcaga 2761 gcctcggcat ggggagctgt ggtgcgccgt gtccaaggac atcgccaact ggcagaagaa 2821 gatcggggac atccttaggc tggtggccgg ccgcatcaag aacaccttct gattgagcgg 2881 ttgccatggc tggtctccgt ggggcagggt tgggccgcat gtggaagggc tttgagctgt 2941 gtcctccttc attaaaagtt tttatgtctc gtgtcagaaa aaaaaaaaaa aaaaaaaaaa 3001 aaaaaaaaaa //