LOCUS BC001643 1862 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tumor necrosis factor, alpha-induced protein 1
(endothelial), mRNA (cDNA clone MGC:2317 IMAGE:2823154), complete
cds.
ACCESSION BC001643
VERSION BC001643.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1862)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1862)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001643.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: p Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 26051238.
FEATURES Location/Qualifiers
source 1..1862
/db_xref="H-InvDB:HIT000030541"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2317 IMAGE:2823154"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1862
/gene="TNFAIP1"
/gene_synonym="B12"
/gene_synonym="B61"
/gene_synonym="MGC2317"
/db_xref="GeneID:7126"
/db_xref="HGNC:HGNC:11894"
/db_xref="MIM:191161"
CDS 197..1147
/gene="TNFAIP1"
/gene_synonym="B12"
/gene_synonym="B61"
/gene_synonym="MGC2317"
/codon_start=1
/product="tumor necrosis factor, alpha-induced protein 1
(endothelial)"
/protein_id="AAH01643.1"
/db_xref="GeneID:7126"
/db_xref="HGNC:HGNC:11894"
/db_xref="MIM:191161"
/translation="MSGDTCLCPASGAKPKLSGFKGGGLGNKYVQLNVGGSLYYTTVR
ALTRHDTMLKAMFSGRMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIK
ELMAEAKYYLIQGLVNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKL
LYNRSNNKYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGR
KLAEVCCTSIVYATEKKQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEATSRSRSQ
ASPSEDEETFELRDRVRRIHVKRYSTYDDRQLGHQSTHRD"
BASE COUNT 432 a 552 c 491 g 387 t
ORIGIN
1 ctgaggggca ggcggctgca ggctaggggc ggctcggagt ccgctggcca cccagctgag
61 aggagaggcg cccccgggga cgcactgaga ttatgaggct ctggcctcca ctggccactc
121 actcgtgacc ctttccacca cggcggagcc ttccaagcct acctcctgcc gtgtggtgat
181 ctacctgcag cgggagatgt cgggggacac ctgcctgtgc ccagcctcag gggccaagcc
241 caagctcagt ggcttcaagg gaggagggtt gggcaacaag tatgtccagc tcaacgtggg
301 cggctctctg tactacacca ctgtgcgggc cctgacccgc cacgacacca tgctcaaggc
361 catgttcagt gggcgcatgg aggtgctgac cgacaaagaa ggctggatcc tcatagaccg
421 ttgtggaaag cactttggca ccattttgaa ttacctccga gatgacacca tcaccctccc
481 tcagaaccgg caagaaatca aggaattgat ggctgaagca aagtattacc tcatccaggg
541 gctggtgaat atgtgccaga gtgccctgca ggacaagaag gactcctacc agcctgtgtg
601 caacatcccc atcatcacat ccctaaagga ggaggagcgg ctcatcgaat cctccaccaa
661 gcccgtggtg aagctgctgt acaacagaag caacaacaag tattcctaca ccagcaactc
721 tgacgaccac ctgctgaaaa acatcgagct gtttgacaag ctctccctgc gcttcaacgg
781 ccgcgtgctc ttcatcaagg atgtcattgg tgacgagatc tgctgctggt ccttttatgg
841 ccagggccgt aagctggcag aggtgtgctg tacctccatc gtgtatgcca cggagaagaa
901 gcagaccaag gtggaattcc cagaggcccg aatctatgag gagacactca acgtcctact
961 ctatgagact ccccgcgtcc ccgacaactc cttgttggag gccacaagcc gtagccgcag
1021 ccaggcttcc cccagtgaag atgaggagac ctttgaactg cgggaccgtg tccgccgcat
1081 ccacgtcaag cgctacagca cttacgatga ccggcagctc ggccaccagt ctacccatcg
1141 cgactgacca gaccctcagg gagtcagggc acgggaggcc ctatctccca tcctgtggaa
1201 cccgccccat tggccacccc atgctgctgc tgcctgggtc tctgctctag cacccagagg
1261 catgacaggc cctgctcaga ggtcagaggg tctgggcaga ggagggacca cattcccctg
1321 ccttgcccct gagcacttct ggagactgcg tcctgtccta tctgctcacc atcacccttc
1381 ctgcccgacg gagctgcttc tgctccctgg ggcatatgga ctgacccacc tcctgctgag
1441 aaccttcccc taggccctgt gcagaagggc tactgcccct taggcctcag ctgggggaaa
1501 ggcagttctg gtgctgtaga ggccctggtg cagaaagtgg gacgtctttt ttcctaaggt
1561 gtttaagcac aggcttgata agtttggttt ttaaaaaata atctaggaaa tgaataattc
1621 taaatctagt aatgaggaaa ctgagcattt cttttgccct ccagggtgcc aagaccctac
1681 atatgacaga acccttggcc cttctccatg cctgtgggat ctgtttcttt aaagcacttt
1741 gtactgttat tcaggaggtt gataatctcc ttgacccatg tctttctacc ctaatcccca
1801 cttccctgca gaatcaatct gagggagggg ataaagagga agcaaaaaaa aaaaaaaaaa
1861 aa
//