LOCUS BC001619 3021 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens aldehyde dehydrogenase 1 family, member B1, mRNA (cDNA
clone MGC:2230 IMAGE:3356389), complete cds.
ACCESSION BC001619
VERSION BC001619.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3021)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3021)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: e Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777729.
FEATURES Location/Qualifiers
source 1..3021
/db_xref="H-InvDB:HIT000030521"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2230 IMAGE:3356389"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3021
/gene="ALDH1B1"
/gene_synonym="ALDHX"
/gene_synonym="MGC2230"
/db_xref="GeneID:219"
/db_xref="HGNC:HGNC:407"
/db_xref="MIM:100670"
CDS 91..1644
/gene="ALDH1B1"
/gene_synonym="ALDHX"
/gene_synonym="MGC2230"
/codon_start=1
/product="aldehyde dehydrogenase 1 family, member B1"
/protein_id="AAH01619.1"
/db_xref="GeneID:219"
/db_xref="HGNC:HGNC:407"
/db_xref="MIM:100670"
/translation="MLRFLAPRLLSLQGRTARYSSAAALPSPILNPDIPYNQLFINNE
WQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERG
RLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKT
IPMDGQHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSA
LYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGD
SNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALFFNMGQCCCAGSRTFVEESIYNE
FLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERVLGYIQLGQKEGAKLLCGGERFG
ERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVVERANNTRYGLAAAVFT
RDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTV
TIKVPQKNS"
BASE COUNT 757 a 752 c 793 g 719 t
ORIGIN
1 gggcggccat gtggacagag ctgggagggc cggaaccaga acccaagcgt gatcctgaac
61 cggagcccga gcctgctgca gagtgtcagc atgctgcgct tcctggcacc ccggctgctt
121 agcctccagg gcaggaccgc ccgctactcc tcggcagcag ccctcccaag ccccattctg
181 aacccagaca tcccctacaa ccagctgttc atcaacaatg aatggcaaga tgcagtcagc
241 aagaagacct tcccgacggt caaccctacc accggggagg tcatcgggca cgtggctgaa
301 ggtgaccggg ctgatgtgga tcgggccgtg aaagcagccc gggaagcctt ccgcctgggg
361 tccccatggc gccggatgga tgcctctgag cggggccggc tgctgaacct cctggcagac
421 ctagtggagc gggatcgagt ctacttggcc tcactcgaga ccttggacaa tgggaagcct
481 ttccaagagt cttacgcctt ggacttggat gaggtcatca aggtgtatcg gtactttgct
541 ggctgggctg acaagtggca tggcaagacc atccccatgg atggccagca tttctgcttc
601 acccggcatg agcccgttgg tgtctgtggc cagatcatcc cgtggaactt ccccttggtc
661 atgcagggtt ggaaacttgc cccggcactc gccacaggca acactgtggt tatgaaggtg
721 gcagagcaga cccccctctc tgccctgtat ttggcctccc tcatcaagga ggcaggcttt
781 ccccctgggg tggtgaacat catcacgggg tatggcccaa cagcaggtgc ggccatcgcc
841 cagcacatgg atgttgacaa agttgccttc accggttcca ccgaggtggg ccacctgatc
901 cagaaagcag ctggcgattc caacctcaag agagtcaccc tggagctggg tggtaagagc
961 cccagcatcg tgctggccga tgctgacatg gagcatgccg tggagcagtg ccacgaagcc
1021 ctgttcttca acatgggcca gtgctgctgt gctggctccc ggaccttcgt ggaagaatcc
1081 atctacaatg agtttctcga gagaaccgtg gagaaagcaa agcagaggaa agtggggaac
1141 ccctttgagc tggacaccca gcaggggcct caggtggaca aggagcagtt tgaacgagtc
1201 ctaggctaca tccagcttgg ccagaaggag ggcgcaaaac tcctctgtgg cggagagcgt
1261 ttcggggagc gtggtttctt catcaagcct actgtctttg gtggcgtgca ggatgacatg
1321 agaattgcca aagaggagat ctttgggcct gtgcagcccc tgttcaagtt caagaagatt
1381 gaggaggtgg ttgagagggc caacaacacc aggtatggcc tggctgcggc tgtgttcacc
1441 cgggatctgg acaaggccat gtacttcacc caggcactcc aggccgggac cgtgtgggta
1501 aacacctaca acatcgtcac ctgccacacg ccatttggag ggtttaagga atctggaaac
1561 gggagggagc tgggtgagga tgggcttaag gcctacacag aggtaaagac ggtcaccatc
1621 aaggttcctc agaagaactc gtaagagcag ctgtcaggga ggcccagtca cagtccagca
1681 attccacaac caccttgacc aatgcttgcc aagctgtttt aaagccaaga acaccctttc
1741 tttgttccaa attaactctt agaagaaacc ccacaaataa agcaattcaa tcaaggctgt
1801 tctatttaaa tcagagatgg ggaccaggct cagagttcta cctatctaac ccccaaccac
1861 agcccccttg gtggcccatg agttgcttcc atgaaatctt aggagtctct ggaggacaga
1921 ttaaaaacca gtgatctgta atttgtagct cttcctgctg atccaaggac tttcccatgg
1981 gtgcgcttga tggtttagtg gatcgactca actcagaaca caagcttgga aagtgttagg
2041 ggttttgaac taggtggata ctaaatctcg gccccactct tcattggctt aacctaaaaa
2101 ccagaggtgc ttttccttgt ctgtgtgcca gttgctggct gttttagttg cttgcccttc
2161 attttgctac tgattttcct taatttgtgg gaaggagtag gcaaagaata tgcttacatg
2221 attacacctg taaagtaagc ccaaacatcc caaatgtcca tcaactgatg agtggattaa
2281 taaaatgttt ccatggaata ttccttggat tactcagcca taaaaaggaa tgaagtactg
2341 acacatgctg tgacatcagt gaaccctgaa aacatccttc tcagtgaaac aagccagaga
2401 gatgtacaag gctacagact gtatgattcc atttatatga aatatacata ctaggcaaat
2461 ccatggagat ggaacataga ttagtggttg ccaggggata gaggagtaat tgttagtggg
2521 catgggattt gtttttggga ggttttgaaa atgttctgga gttgaacaat agtaatggtt
2581 gcatgatttg gtaaaaatac taaaaactat ggaattgttt aattatggta tatgaattaa
2641 tttctttctt tttttctttt tttttttttt tttgacacgg agtctcactc tgtcgcccag
2701 gctggagtgc agtggtgtga tctcgtctca ctgcaacctc cgcctcccag attcaagcga
2761 ttctcctgtc tcagcctcct gagtagctgg gattataggt acatgccatc acacctggct
2821 aatttttgta tttttagtag agatgaggtt tcaccatttt ggccaggctg atcttgaact
2881 cctgacctca ggtgatccac ccgcctcagc ctcccaaagt gctgggatta caggtgggag
2941 ccacaacacc cgaccatgaa ttaactccgt taaaaaataa acgtatacat tctgtgagca
3001 aaaaaaaaaa aaaaaaaaaa a
//