LOCUS BC001588 2756 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PRP4 pre-mRNA processing factor 4 homolog (yeast),
mRNA (cDNA clone MGC:1501 IMAGE:2988225), complete cds.
ACCESSION BC001588
VERSION BC001588.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2756)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2756)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001588.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: n Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222192.
FEATURES Location/Qualifiers
source 1..2756
/db_xref="H-InvDB:HIT000030501"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1501 IMAGE:2988225"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2756
/gene="PRPF4"
/gene_synonym="HPRP4"
/gene_synonym="HPRP4P"
/gene_synonym="PRP4"
/gene_synonym="Prp4p"
/db_xref="GeneID:9128"
/db_xref="HGNC:HGNC:17349"
/db_xref="MIM:607795"
CDS 51..1619
/gene="PRPF4"
/gene_synonym="HPRP4"
/gene_synonym="HPRP4P"
/gene_synonym="PRP4"
/gene_synonym="Prp4p"
/codon_start=1
/product="PRP4 pre-mRNA processing factor 4 homolog
(yeast)"
/protein_id="AAH01588.1"
/db_xref="GeneID:9128"
/db_xref="HGNC:HGNC:17349"
/db_xref="MIM:607795"
/translation="MASSRASSTQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLA
KGESGILGKDGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVS
TDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKE
EYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSL
RSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV
GAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS
GRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVW
DLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQN
LVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIA
TCSYDRTFKLWMAE"
BASE COUNT 745 a 617 c 697 g 697 t
ORIGIN
1 gaaagggagt gttcgggttt cgctggggcc tcgcggctcc agagcccagc atggcttcct
61 cgcgagcctc ttccacgcag gcaaccaaaa ctaaagcacc cgacgactta gttgctccgg
121 tcgtgaagaa accacacatc tattatggaa gtttggaaga gaaggagagg gagcgtctgg
181 ccaaaggaga gtctgggatt ttggggaaag acggacttaa agcagggatc gaagctggaa
241 atattaatat aacctctgga gaagtgtttg aaattgaaga gcatatcagc gagcgacagg
301 cagaagtatt ggctgagttt gagagaagga agcgagcccg gcagatcaat gtttccacag
361 atgactcaga ggtcaaagct tgccttagag ccttggggga acccatcaca ctttttggag
421 agggtcctgc tgaaagaaga gaaaggttaa gaaatatcct ctcagttgtc ggtactgatg
481 ccttgaaaaa gaccaaaaag gatgatgaga agtctaaaaa gtccaaagaa gagtatcagc
541 aaacctggta tcatgaagga ccaaatagct tgaaggtggc aagactatgg attgctaatt
601 attcgttgcc cagggcaatg aaacgcttgg aagaggcccg actccataag gagattcctg
661 agacaacaag gacctcccag atgcaagagc tgcacaagtc tctccggtct ttgaataatt
721 tttgcagtca gattggggat gatcggccta tctcctactg tcactttagt cccaattcca
781 agatgctggc cacagcttgt tggagtgggc tttgcaagct ctggtctgtt cctgattgca
841 acctccttca cactcttcga gggcataaca caaatgtagg agcaattgta ttccatccca
901 aatccactgt ctccttggac ccaaaagatg tcaacctggc ctcttgtgcg gctgatggct
961 ctgtgaagct ttggagtctc gacagtgatg aaccagtggc agatattgaa ggccatacag
1021 tgcgtgtggc gcgggtaatg tggcatcctt caggacgttt cctgggcacc acctgctatg
1081 accgttcatg gcgcttatgg gatttggagg ctcaagagga gatcctgcat caggaaggcc
1141 atagcatggg tgtgtatgac attgccttcc atcaagatgg ctctttggct ggcactgggg
1201 gactggatgc atttggtcga gtttgggacc tacgcacagg acgttgtatc atgttcttag
1261 aaggccacct gaaagaaatc tatggaataa atttctcccc caatggctat cacattgcaa
1321 ccggcagtgg tgacaacacc tgcaaagtgt gggacctccg acagcggcgt tgcgtctaca
1381 ccatccctgc tcatcagaac ttagtgactg gtgtcaagtt tgagcctatc catgggaact
1441 tcttgcttac tggtgcctat gataacacag ccaagatctg gacgcaccca ggctggtccc
1501 cgctgaagac tctggctggc cacgaaggca aagtgatggg cctagatatt tcttccgatg
1561 ggcagctcat agccacttgc tcatatgaca ggaccttcaa gctgtggatg gctgaataga
1621 tgacaatggg aaaaggactt gaacctcaag ctctctctaa ggagctgttt tcctcaaacg
1681 agaagaattg aagtgtttag ttctatcatg ttttctgcca attaccatgc atagaccctc
1741 agtagaattg gatttccatg tcagccccca ctccaggaag gcagcccaat ccctaggtga
1801 tggggaaccc ctctcacggt tgaaaattta ttaccttttt acgccctgcc acgaactgtg
1861 tagacattgt ttttattaat cttttgtttg gccgggcgtg gtggctcacg cctgtaatcc
1921 tagcactttg ggaggccgag gtgggtagat cgcttgagct caggagttca agacgagcct
1981 gggcaacatg gcaaatgccg tctctgcaaa aaaatactaa aattagctgg tcgcggtggc
2041 ttctgcctgt gattccggct acttgggagg ctgaggtggg agggattgct taagcctggg
2101 aggcagaggt tgcagtgagc cgagattgcg ccattgcact ctagcctgtg tgacagagca
2161 agaccctgtc tcaaaaaaaa aaaaaatttg ttcgaatgcc ttatagcctt cctcacagca
2221 cccaggattg tgactgactc tgcattttta attcttgaaa cttggctttc cataacatgg
2281 tacatgcttc aggactacat atgacccaga gagcaaggtg gctgaactat agtctggaag
2341 ccctcaggta aagaggcaca tctcaccact cattggttaa acaatgcatc atagcgagca
2401 cttttccttt ccctggagaa tgggatgtga agcagtagac cgcagccacg ccgatggtta
2461 tacagtgaag aagacttcac ctcttcctat tgagtttgct tggaatgctg acagcatcag
2521 gcaactctga actgaacatt tgctttgtca gaaaatatct ttttttttac tttgaagttt
2581 ggcaaccttc atgttacccc aaagcaaaac cattgtgtca ggagtcaaac aaatgtttag
2641 aaagcaaaca tgacgtctct attgtacaac ctcctttctc ttggctgttt aaaggatgta
2701 cttcgtgtat taaagggtac tttatgttga agtaaaaaaa aaaaaaaaaa aaaaaa
//