LOCUS BC001543 2082 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens homeobox C11, mRNA (cDNA clone MGC:4906 IMAGE:3462682), complete cds. ACCESSION BC001543 VERSION BC001543.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2082) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2082) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 4 Row: d Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497534. FEATURES Location/Qualifiers source 1..2082 /db_xref="H-InvDB:HIT000030482" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:4906 IMAGE:3462682" /tissue_type="Cervix, carcinoma" /clone_lib="NIH_MGC_12" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2082 /gene="HOXC11" /gene_synonym="MGC4906" /db_xref="GeneID:3227" /db_xref="HGNC:HGNC:5123" /db_xref="MIM:605559" CDS 98..1012 /gene="HOXC11" /gene_synonym="MGC4906" /codon_start=1 /product="homeobox C11" /protein_id="AAH01543.1" /db_xref="GeneID:3227" /db_xref="HGNC:HGNC:5123" /db_xref="MIM:605559" /translation="MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEF STVFSFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHR ECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYC GGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVA KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQV KIWFQNRRMKEKKLSRDRLQYFSGNPLL" BASE COUNT 472 a 619 c 536 g 455 t ORIGIN 1 ctaagacgga taacgcgtca tctcgccttc ccaaattttc ccccctcgct agaccgggtc 61 caaaacctcc atccggagcc ggcaggagag gagaacgatg tttaactcgg tcaacctggg 121 caacttctgc tcgccgtcgc gcaaggagag gggcgcagat ttcggcgagc gagggagctg 181 cgcctccaac ctctatctgc ccagttgcac ttactacatg cccgagttct ccacggtctt 241 ctccttcctg ccccaggccc cctctcgtca gatctcctat ccctactcgg cccaagtgcc 301 cccggtccgg gaggtctcct acggcctgga gccatccggc aagtggcacc atcggaacag 361 ctactcctcc tgctatgcgg cggccgacga gcttatgcac cgggagtgcc tgcctccttc 421 caccgtcacc gagatcctca tgaaaaacga aggctcctac ggcggccacc accaccccag 481 cgccccgcac gcaacccccg ccggcttcta ctcctcagtc aacaagaaca gcgtcctgcc 541 tcaagccttc gaccgtttct tcgacaacgc ctactgcggt ggcggcgacc cgcccgccga 601 gcccccctgc tccggcaagg gcgaggccaa gggggagccc gaggcacccc cggcctcggg 661 actggcgtcc cgggctgagg cgggtgccga ggcggaggct gaggaggaga acacaaatcc 721 cagctcgtcc ggttcagccc actccgtggc caaggagccg gccaaaggag ccgcccccaa 781 cgccccccgc acccgcaaga agcgctgccc ttattcgaaa ttccagatcc gggaactgga 841 gcgagagttt ttcttcaacg tgtatatcaa caaagagaag cggctgcagc tgtcccggat 901 gctgaacctg acggaccgac aagtgaaaat ttggtttcag aacagaagga tgaaagaaaa 961 gaaactgagc agagaccggc tgcagtattt ctcgggaaat cctctgctgt aacctgcaga 1021 ccgggccctt ttgggggcgg ggggagggga aaattatttt attttatttt tattttttat 1081 tttctaactc gtcttctttc cgccggtgga aaactggact gtggccaggg ctggccccca 1141 ccgctgtggc cggcactcca ttccggaacc tcctggaccc tctatctgac tctcgctgtg 1201 ggacagggac cgggcctgga aagggggtga agggaagtgt ctgatgcacg gcgagtgaac 1261 accgttggcg ccgaggccaa gactttgatt taaaagaaaa cacacctcgg cgacaatgtc 1321 ttgctgctcg gattaggtgg gggaggggcg acagtagtga gcgcctgagc cgaacaatcc 1381 tcgaactaaa agccttccct tgcccatgtg aaaagatccg ctaagacagc atgtctgcca 1441 gcggaaactt ctcgagctcc cccctctacc ccgccccacc ttgccccact actttagggg 1501 gcagctaaat gtgatcctgc cttgctgtga aatttctgta ccttcaacct ggtgttaggt 1561 gtgcaaagtc cgtgtcctac ctccgtcttc gccaaggccc cgcccgagcc tagttgttct 1621 ccccctgaat gtgtagaacc ttcctttgaa atttcttaat cggtgcattg aggtttccac 1681 atctttttcc aagcagtgcc ccacttcatg gatttatagc tatagtctat gcagtcgtta 1741 cctctttttt tttttttttt taagaaaatt gaagattggg gtggtggagg cagtagggag 1801 atgggattgg gcacctcccc cgtgctgggg cctggatttt tgtaaataaa tttcccaagc 1861 gtttctttcc acctggaggg aaaggggggg acgcccccag tgagattcaa atcacgcatc 1921 tctactcctc tgcgtgagtg cgtgtgtaca tgtgcactcc ccaccctgct cccttcccag 1981 agggattgct gtgaaatttt tttggtggca aataaagata aatttcattc tgttcaaaaa 2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa //