LOCUS BC001494 1522 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 40kDa (U5), mRNA (cDNA
clone MGC:1910 IMAGE:3504573), complete cds.
ACCESSION BC001494
VERSION BC001494.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1522)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1522)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC001494.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: k Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758559.
FEATURES Location/Qualifiers
source 1..1522
/db_xref="H-InvDB:HIT000030451"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1910 IMAGE:3504573"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1522
/gene="SNRNP40"
/gene_synonym="40K"
/gene_synonym="HPRP8BP"
/gene_synonym="PRP8BP"
/gene_synonym="PRPF8BP"
/gene_synonym="RP11-490K7.3"
/gene_synonym="SPF38"
/db_xref="GeneID:9410"
/db_xref="HGNC:HGNC:30857"
/db_xref="MIM:607797"
CDS 23..1096
/gene="SNRNP40"
/gene_synonym="40K"
/gene_synonym="HPRP8BP"
/gene_synonym="PRP8BP"
/gene_synonym="PRPF8BP"
/gene_synonym="RP11-490K7.3"
/gene_synonym="SPF38"
/codon_start=1
/product="small nuclear ribonucleoprotein 40kDa (U5)"
/protein_id="AAH01494.1"
/db_xref="GeneID:9410"
/db_xref="HGNC:HGNC:30857"
/db_xref="MIM:607797"
/translation="MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGAL
LQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNY
ATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPA
RRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK
VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI
FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVA
FHPDEPIIISASSDKRLYMGEIQ"
BASE COUNT 419 a 334 c 373 g 396 t
ORIGIN
1 gctgaagaga ccggttgccg ccatgataga acagcagaag cgtaagggcc cagagttgcc
61 gctggttcca gtcaagcggc agcggcatga gttgctgttg ggagcggggt ctggcccagg
121 agccgggcag cagcaggcga cgccgggagc cttgctgcaa gcgggacctc caagatgttc
181 ctcccttcaa gccccaatca tgctgctctc tggacatgaa ggggaagtct actgctgcaa
241 gttccacccc aacggatcca ccttagcatc tgcaggattt gaccgactga tattactgtg
301 gaatgtctat ggtgactgtg ataactatgc cacactgaag ggacacagtg gagcagtgat
361 ggaattgcat tacaacacag atggcagtat gcttttctca gcatccacag ataaaaccgt
421 ggctgtgtgg gatagtgaaa caggtgagag ggttaaaagg ctaaagggac atacttcctt
481 tgtgaattcc tgttatccag ccaggagagg ccctcagctt gtctgcactg gcagtgacga
541 tggcacagtt aagctttggg acatccggaa gaaagcagcc atccagacat ttcagaacac
601 gtaccaggtg ttagctgtga ccttcaatga cacaagtgat cagattattt ctggtggaat
661 agacaatgat atcaaggtct gggacctgcg ccagaacaag ctaacctaca ccatgagagg
721 ccatgcagat tcagtgactg gcctgagttt aagttctgaa ggctcttatc ttttgtccaa
781 tgcaatggac aatacagttc gtgtctggga tgtccggcca tttgccccca aagagagatg
841 tgtaaagata tttcaaggaa atgtgcacaa ctttgaaaag aaccttctga gatgttcttg
901 gtcacctgat ggaagcaaaa tagcagctgg ctcagccgac aggtttgttt atgtgtggga
961 taccacaagc aggagaatat tgtataagct gcccggccat gctggctcca tcaatgaagt
1021 ggctttccac cctgatgagc ccatcattat ctcagcatcg agtgacaaga gactgtatat
1081 gggagagatt cagtgaagat atggactgga agactccaag gccgcttgtc tttgagacct
1141 cagactgcat aagtgatgcc aaatgttgga tgtccaggct agcaccctcc cttcagatga
1201 ccattgctag caagaaacag gaggcggtgg ccatattcca aaaaccactt ctgtcccatt
1261 tcaccaggat gactaaggca agctccctgt ggcctctaaa aaccacctgc cagatttcag
1321 ggactgtttt tttttttctt tttctttttt cctgttttct aatgcaggcc caatgtgaca
1381 aatttgttgg ttgggatttt tttttttttt tgtaactggc ttgtatgata ttttctttct
1441 gtatttctct atatcatttt gtattaaaag ccaaatagat gcctttttaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aa
//