LOCUS BC001494 1522 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens small nuclear ribonucleoprotein 40kDa (U5), mRNA (cDNA clone MGC:1910 IMAGE:3504573), complete cds. ACCESSION BC001494 VERSION BC001494.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1522) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1522) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 8, 2003 this sequence version replaced BC001494.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 7 Row: k Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4758559. FEATURES Location/Qualifiers source 1..1522 /db_xref="H-InvDB:HIT000030451" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1910 IMAGE:3504573" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1522 /gene="SNRNP40" /gene_synonym="40K" /gene_synonym="HPRP8BP" /gene_synonym="PRP8BP" /gene_synonym="PRPF8BP" /gene_synonym="RP11-490K7.3" /gene_synonym="SPF38" /db_xref="GeneID:9410" /db_xref="HGNC:HGNC:30857" /db_xref="MIM:607797" CDS 23..1096 /gene="SNRNP40" /gene_synonym="40K" /gene_synonym="HPRP8BP" /gene_synonym="PRP8BP" /gene_synonym="PRPF8BP" /gene_synonym="RP11-490K7.3" /gene_synonym="SPF38" /codon_start=1 /product="small nuclear ribonucleoprotein 40kDa (U5)" /protein_id="AAH01494.1" /db_xref="GeneID:9410" /db_xref="HGNC:HGNC:30857" /db_xref="MIM:607797" /translation="MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGAL LQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNY ATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPA RRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIK VWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKI FQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVA FHPDEPIIISASSDKRLYMGEIQ" BASE COUNT 419 a 334 c 373 g 396 t ORIGIN 1 gctgaagaga ccggttgccg ccatgataga acagcagaag cgtaagggcc cagagttgcc 61 gctggttcca gtcaagcggc agcggcatga gttgctgttg ggagcggggt ctggcccagg 121 agccgggcag cagcaggcga cgccgggagc cttgctgcaa gcgggacctc caagatgttc 181 ctcccttcaa gccccaatca tgctgctctc tggacatgaa ggggaagtct actgctgcaa 241 gttccacccc aacggatcca ccttagcatc tgcaggattt gaccgactga tattactgtg 301 gaatgtctat ggtgactgtg ataactatgc cacactgaag ggacacagtg gagcagtgat 361 ggaattgcat tacaacacag atggcagtat gcttttctca gcatccacag ataaaaccgt 421 ggctgtgtgg gatagtgaaa caggtgagag ggttaaaagg ctaaagggac atacttcctt 481 tgtgaattcc tgttatccag ccaggagagg ccctcagctt gtctgcactg gcagtgacga 541 tggcacagtt aagctttggg acatccggaa gaaagcagcc atccagacat ttcagaacac 601 gtaccaggtg ttagctgtga ccttcaatga cacaagtgat cagattattt ctggtggaat 661 agacaatgat atcaaggtct gggacctgcg ccagaacaag ctaacctaca ccatgagagg 721 ccatgcagat tcagtgactg gcctgagttt aagttctgaa ggctcttatc ttttgtccaa 781 tgcaatggac aatacagttc gtgtctggga tgtccggcca tttgccccca aagagagatg 841 tgtaaagata tttcaaggaa atgtgcacaa ctttgaaaag aaccttctga gatgttcttg 901 gtcacctgat ggaagcaaaa tagcagctgg ctcagccgac aggtttgttt atgtgtggga 961 taccacaagc aggagaatat tgtataagct gcccggccat gctggctcca tcaatgaagt 1021 ggctttccac cctgatgagc ccatcattat ctcagcatcg agtgacaaga gactgtatat 1081 gggagagatt cagtgaagat atggactgga agactccaag gccgcttgtc tttgagacct 1141 cagactgcat aagtgatgcc aaatgttgga tgtccaggct agcaccctcc cttcagatga 1201 ccattgctag caagaaacag gaggcggtgg ccatattcca aaaaccactt ctgtcccatt 1261 tcaccaggat gactaaggca agctccctgt ggcctctaaa aaccacctgc cagatttcag 1321 ggactgtttt tttttttctt tttctttttt cctgttttct aatgcaggcc caatgtgaca 1381 aatttgttgg ttgggatttt tttttttttt tgtaactggc ttgtatgata ttttctttct 1441 gtatttctct atatcatttt gtattaaaag ccaaatagat gcctttttaa aaaaaaaaaa 1501 aaaaaaaaaa aaaaaaaaaa aa //