LOCUS BC001443 1987 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3 regulator 1, mRNA (cDNA clone MGC:1482 IMAGE:3138881),
complete cds.
ACCESSION BC001443
VERSION BC001443.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1987)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1987)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001443.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759139.
FEATURES Location/Qualifiers
source 1..1987
/db_xref="H-InvDB:HIT000030419"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1482 IMAGE:3138881"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1987
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
CDS 189..1265
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 3 regulator 1"
/protein_id="AAH01443.1"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
/translation="MSADAAAGAPLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP
GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQLQKL
GVQVREELLRAQEAPGQAEPPAAAEVQGAGNENEPREADKSHPEQRELRPRLCTMKKG
PSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA
IRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEA
ALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERA
HQKRSSKRAPQMDWSKKNELFSNL"
BASE COUNT 423 a 624 c 583 g 357 t
ORIGIN
1 gtcctctctc ggctcctcgc ggctcgcggc ggccgacggt tcctgggaca cctgcttgct
61 tggcccgtcc ggcggctcag ggcttctctg ctgcgctccc ggttcgctgg acgggaagaa
121 gggctgggcc gtcccgtccc gtccccatcg gaaccccaag tcgcgccgct gacccgtcgc
181 agggcgagat gagcgcggac gcagcggccg gggcgcccct gccccggctc tgctgcctgg
241 agaagggtcc gaacggctac ggcttccacc tgcacgggga gaagggcaag ttgggccagt
301 acatccggct ggtggagccc ggctcgccgg ccgagaaggc ggggctgctg gcgggggacc
361 ggctggtgga ggtgaacggc gaaaacgtgg agaaggagac ccaccagcag gtggtgagcc
421 gcatccgcgc cgcactcaac gccgtgcgcc tgctggtggt cgaccccgag acggacgagc
481 agctgcagaa gctcggcgtc caggtccgag aggagctgct gcgcgcccag gaagcgccgg
541 ggcaggccga gccgccggcc gccgccgagg tgcagggggc tggcaacgaa aatgagcctc
601 gcgaggccga caagagccac ccggagcagc gcgagcttcg gcctcggctc tgtaccatga
661 agaagggccc cagtggctat ggcttcaacc tgcacagcga caagtccaag ccaggccagt
721 tcatccggtc agtggaccca gactccccgg ctgaggcttc agggctccgg gcccaggatc
781 gcattgtgga ggtgaacggg gtctgcatgg aggggaagca gcatggggac gtggtgtccg
841 ccatcagggc tggcggggac gagaccaagc tgctggtggt ggacagggaa actgacgagt
901 tcttcaagaa atgcagagtg atcccatctc aggagcacct gaatggtccc ctgcctgtgc
961 ccttcaccaa tggggagata cagaaggaga acagtcgtga agccctggca gaggcagcct
1021 tggagagccc caggccagcc ctggtgagat ccgcctccag tgacaccagc gaggagctga
1081 attcccaaga cagcccccca aaacaggact ccacagcgcc ctcgtctacc tcctcctccg
1141 accccatcct agacttcaac atctccctgg ccatggccaa agagagggcc caccagaaac
1201 gcagcagcaa acgggccccg cagatggact ggagcaagaa aaacgaactc ttcagcaacc
1261 tctgagcgcc ctgctgccac ccagtgactg gcagggccga gccagcattc caccccacct
1321 ttttccttct ccccaattac tcccctgaat caatgtacaa atcagcaccc acatcccctt
1381 tcttgacaaa tgatttttct agagaactat gttcttccct gactttaggg aaggtgaatg
1441 tgttcccgtc ctcccgcagt cagaaaggag actctgcctc cctcctcctc actgagtgcc
1501 tcatcctacc gggtgtccct ttgccaccct gcctgggaca tcgctggaac ctgcaccatg
1561 ccaggatcat gggaccaggc gagagggcac cctcccttcc tcccccatgt gataaatggg
1621 tccagggctg atcaaagaac tctgactgca gaactgccgc tctcagtgga cagggcatct
1681 gttaccctga gacctgtggc agacacgtct tgttttcatt tgatttttgt taagagtgca
1741 gtattgcaga gtctagagga atttttgttt ccttgattaa catgattttc ctggttgtta
1801 catccagggc atggcagtgg cctcagcctt aaacttttgt tcctactccc accctcagcg
1861 aactgggcag cacggggagg gtttggctac ccctgcccat ccctgagcca ggtaccacca
1921 ttgtaaggaa acactttcag aaattcagct ggttcctcca aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaa
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