LOCUS BC001417 1780 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 200kDa (U5), mRNA
(cDNA clone IMAGE:3140321), partial cds.
ACCESSION BC001417
VERSION BC001417.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1780)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1780)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC001417.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: i Column: 22.
FEATURES Location/Qualifiers
source 1..1780
/db_xref="H-InvDB:HIT000030395"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3140321"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1780
/gene="SNRNP200"
/gene_synonym="BRR2"
/gene_synonym="HELIC2"
/gene_synonym="U5-200KD"
/db_xref="GeneID:23020"
/db_xref="HGNC:HGNC:30859"
/db_xref="MIM:601664"
CDS <1..1487
/gene="SNRNP200"
/gene_synonym="BRR2"
/gene_synonym="HELIC2"
/gene_synonym="U5-200KD"
/codon_start=3
/product="SNRNP200 protein"
/protein_id="AAH01417.4"
/db_xref="GeneID:23020"
/db_xref="HGNC:HGNC:30859"
/db_xref="MIM:601664"
/translation="VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQ
MVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKT
IENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSK
AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTD
KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGP
VVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL
DFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD"
BASE COUNT 448 a 452 c 469 g 411 t
ORIGIN
1 aggtggtggt ggcttctcgg agtctctgct ggggcatgaa cgtggctgcc cacctggtaa
61 tcatcatgga tacccagtac tacaatggca agatccacgc ctatgtggat taccccatct
121 atgacgtgct tcagatggtg ggccacgcca accgcccttt gcaggacgat gaggggcgct
181 gtgtcatcat gtgtcagggc tccaagaagg atttcttcaa gaagttctta tatgagccat
241 tgccagtaga atctcacctg gaccactgta tgcatgacca cttcaatgct gagatcgtca
301 ccaagaccat tgagaacaag caggatgctg tggactacct cacctggacc tttctgtacc
361 gccgcatgac acagaacccc aattactaca acctgcaggg catctcccat cgtcacttgt
421 cggaccactt gtcagagctg gtggagcaga ccctgagtga cctggagcag tccaagtgca
481 tcagcatcga ggacgagatg gacgtggcgc ctctgaacct aggcatgatc gccgcctact
541 attacatcaa ctacaccacc attgagctct tcagcatgtc cctcaatgcc aagaccaagg
601 tgcgagggct tatcgagatc atctccaatg cagcagagta tgagaacatt cccatccggc
661 accatgaaga caatctcctg aggcagttgg ctcagaaggt cccccacaag ctgaataacc
721 ctaagttcaa tgatccgcac gtcaagacca acctgctcct gcaggctcac ttgtctcgca
781 tgcagctgag tgctgagttg cagtcagata cggaggaaat ccttagtaag gcaatccggc
841 tcatccaggc ctgcgtggat gtcctttcca gcaatgggtg gctcagccct gctctggcag
901 ctatggaact ggcccagatg gtcacccaag ccatgtggtc caaggactca tacctgaagc
961 agctgccaca cttcacctct gagcatatca aacgttgcac agacaaggga gtggagagtg
1021 ttttcgacat catggagatg gaggatgaag aacggaacgc gttgcttcag ctgactgaca
1081 gccagattgc agatgtggct cgcttttgta accgctaccc taatatcgaa ctatcttatg
1141 aggtggtaga taaggacagc atccgcagtg gcgggccagt tgtggtgctg gtgcagctgg
1201 agcgagagga ggaagtcaca ggccctgtca ttgcgcctct cttcccgcag aaacgtgaag
1261 agggctggtg ggtggtgatt ggagatgcca agtccaatag cctcatctcc atcaagaggc
1321 tgaccttgca gcagaaggcc aaggtgaagt tggactttgt ggccccagcc actggtgccc
1381 acaactacac tctgtacttc atgagtgacg cttacatggg atgtgaccag gagtacaaat
1441 tcagcgtgga tgtgaaagaa gctgagacag acagtgattc agattgagtc ctgaggcatt
1501 tacttttggg taaaggagag ttgagcctga attaggaatg tgtacattgt aggaatcctg
1561 gttgtgggga ccaggtctgt gggcctcagg tctggccagc cagggctggt gctgtccccg
1621 cctacctcca cttcctttcc cttgctcact ctggatccag tgacagcagg tgtcatgggt
1681 caagcataaa tcatatatag cattttcagg catgttcctg gtagttcttt tgagtctgac
1741 attctaataa aataatttgt agaaaaaaaa aaaaaaaaaa
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