LOCUS BC001404 3200 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens SEC16 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:3139772), partial cds.
ACCESSION BC001404
VERSION BC001404.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3200)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3200)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001404.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: e Column: 8.
FEATURES Location/Qualifiers
source 1..3200
/db_xref="H-InvDB:HIT000086004"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3139772"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3200
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
CDS <1..1519
/gene="SEC16A"
/gene_synonym="p250"
/gene_synonym="RP11-413M3.10"
/gene_synonym="SEC16L"
/codon_start=2
/product="SEC16A protein"
/protein_id="AAH01404.2"
/db_xref="GeneID:9919"
/db_xref="HGNC:HGNC:29006"
/translation="SAFGDRPEKRDNNWRYDPRFTGSFDDDPDPHRDPYGEEVDRRSV
HSEHSARSLHSAHSLASRRSSLSSHSHQSQIYRSHNVAAGSYEAPLPPGSFHGDFAYG
TYRSNFSSGPGFPEYGYPALGFLEPSGPGLPPGVPPLQERRHLLQEARSPDPGIVPQE
APVGNSLSELSEENFDGKFANLTPSRTVPDSEAPPGWDRADSGPTQPPLSLSPAPETK
RPGQAAKKETKEPKKGESWFFRWLPGKKKTEAYLPDDKDKSIVWDEKKNQWVNLNEPE
EEKKAPPPPPTSMPKTVQAAPPALPGPPGAPVNMYSRRAAGTRARYVDVLNPSGTQRS
EPALAPADFVAPLAPLPIPSNLFVPTPVRPQGRSGRNDGLLALSSPDAEEPQLPDGTG
REGPAAARGLANPEPAPEPKVLSSAASLPGSELPSSRPEGSQGGELSRCSSMSSLSRE
VSQHFNQAPGDLPAAGGPPSGAMPFYNPAQLAQACATSGSSRLGRIGQRKHLVLN"
BASE COUNT 738 a 902 c 827 g 733 t
ORIGIN
1 ctctgccttc ggggacaggc ccgagaaacg tgacaacaac tggaggtacg atcctcgctt
61 cacggggagt tttgacgatg accccgatcc gcacagagac ccttatgggg aagaggtgga
121 ccggcgcagc gtccacagcg agcactcggc acggagcctg cacagcgcac acagcctggc
181 cagccgccgc agcagcctca gctcccactc gcaccagagt cagatttaca gaagccacaa
241 tgtggctgcc ggttcctacg aggccccgct tcctccaggc tcctttcacg gcgattttgc
301 ctacggcacc taccgcagca atttcagcag tggccccggc ttcccagagt atggctaccc
361 tgcacttggc ttcctggagc cctccgggcc tggcctccca cctggtgtgc cacctctgca
421 ggaaaggaga cacttgctcc aggaagccag gagcccagac ccagggatag tgccgcagga
481 ggcgcctgtt ggaaactcac tttccgagct aagcgaagaa aattttgatg gaaaatttgc
541 taatctgacc ccctcgagga cggtgccaga ctcggaggcc cccccagggt gggatcgtgc
601 cgactcgggt cccacgcagc cacctctgtc tctctcaccc gctcccgaaa caaagagacc
661 cggacaggca gccaagaaag aaacgaagga acctaagaag ggtgaatcct ggttctttcg
721 ttggctacct ggaaagaaaa agacagaagc ttatttgcca gatgacaagg acaaatcgat
781 tgtttgggat gaaaagaaaa accagtgggt gaatttaaat gagccagaag aggagaagaa
841 agccccgccc ccacctccaa cctcgatgcc caagactgtg caagctgccc cgcctgccct
901 cccagggcct cctggagccc ccgtgaacat gtactctaga agagcagcag gaaccagagc
961 tcgctacgtt gacgtcctga acccaagcgg gacccagcgg agcgagccgg ctctcgctcc
1021 tgcggacttt gtcgctccac tcgcgccact cccaattcct tctaacttgt tcgtgccaac
1081 cccagtgaga ccccagggac gttcgggacg gaatgatggc ctcctcgctc tctcatcccc
1141 agatgcagaa gaaccacagc ttccagacgg gactggcagg gaagggcctg cagcagctag
1201 gggcctggcc aatccagagc ctgccccaga gcccaaggtt ttaagctctg cagcgtcact
1261 ccctggctct gaactcccct cctccaggcc tgagggttcc cagggaggag agctttcgcg
1321 ctgtagttca atgagttcat tatcacgtga agtgagccag cattttaatc aggctcctgg
1381 cgacctccct gctgcagggg gccctcccag cggggccatg cccttctaca accctgctca
1441 gctggcacag gcctgcgcca cctccgggag ctcaaggcta gggaggattg gccagaggaa
1501 gcacctggtg ctgaactagg cttgccctgc tgtgaacttg cacttggagc cctgacgctg
1561 ctgttctccc cgaagaaccc aaccgacctc cgcgatctcc gtcccgcccc cagggagaca
1621 cagcagtgac tcagagctgg tcgcacactg tgcctccctc ctcaccgccc atcgtaatga
1681 attattttga aaattaattc caccatcctt tcagattctg gatggaaaga ctgaatcttt
1741 gactcagaat tgtttgccga aaagaatgat gtgactttct tagtcattta ggatgattta
1801 aggatatagt attcctggtc atttaagaat gttcattcat tgaagccgga gctgtctctg
1861 ccacaggaga gccacatggt cggtagtaac cagggcctct ccaagcccag ctgtgagtca
1921 ctgcccagtg agtcccgcgc ttcctttaag gtgctgggag caaagagagg gtgactgagg
1981 cagaccccaa cccctgctct gcaccatctg ggccctcgcc gtgtttgaac ctggctgaat
2041 gagtggaggg cgctgtgttc tcaatcagcg cctccgagga gccgtggggt tccttcggca
2101 ttagttcacg gtttttgaga gaggccttag ttactgcagt gaatttcttt cctgttgcaa
2161 agacgcttcc agcctcactt tactttctgt ggcctgatga ggaccatggg tgattttgtg
2221 tacccaaagc gctggggact gcccaccgtg tggcccagtc actgggaagg agccccagag
2281 agccggctgt ctgacatgat ggctcagggt ggtcatccag gttgaaaact gaccgtgtga
2341 tgtttgattt gggcttcatt tcgtgtgtag gagcacggtt agactcactg ttaaggaagc
2401 tggatgcact tctctaaaag gctgcacttt ccgtgagcac ttttcgtggt acaatccaca
2461 tgacccactt tctcccctgg gggacgttgg ttcagaggtt ggtagcactt ggggagagta
2521 tcttaacaca gtttcttgac agcagctctg gaacttagta tttctgcccc gagttttgcc
2581 acactgagac tttgagtagc tcctggtgga ctcaaccctg ttcaactcag agacgggcct
2641 cctctcactg atgcaaagct ttaaggcttc tctgactgtt ctgaaactct tcgtattctt
2701 gtcaagtcta aagagactga agaaaagatt taaatactaa taaaaatcag tagataattt
2761 ctgtaggttc tgctggagga atacaaactg tttggtgttt taaatttaag tgtagaaatt
2821 gtagaatgtg gaattagcac agatccttcc tggctttctg tttcacttga tcatttagcc
2881 cagaccaccc aggatgtttt ccaaaatgtt ccacaggcgt gtcccgctgg atccatttgt
2941 ccttgtcact tggagaaagg ccagtccctg tgacggggca gccctctctg tccctcggtc
3001 agctcgtgtg aatcctggga cctcttccgg tcggctctgc ccgctgttct ggggtcgact
3061 gccacgactt ttgattcaag aagcttcctc caggcgggag cggctatttt tcctaaatga
3121 gaattgttac attgcaaatt gttgaataaa atattttgcg ctccttcaaa aaaaaaaaaa
3181 aaaaaaaaaa aaaaaaaaaa
//