LOCUS BC001394 1514 bp mRNA linear HUM 09-SEP-2005
DEFINITION Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin),
member 6, mRNA (cDNA clone MGC:2180 IMAGE:3051381), complete cds.
ACCESSION BC001394
VERSION BC001394.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1514)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1514)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC001394.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: m Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41152085.
FEATURES Location/Qualifiers
source 1..1514
/db_xref="H-InvDB:HIT000030377"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2180 IMAGE:3051381"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1514
/gene="SERPINB6"
/gene_synonym="CAP"
/gene_synonym="MSTP057"
/gene_synonym="PTI"
/db_xref="GeneID:5269"
/db_xref="MIM:173321"
CDS 226..1356
/gene="SERPINB6"
/gene_synonym="CAP"
/gene_synonym="MSTP057"
/gene_synonym="PTI"
/codon_start=1
/product="SERPINB6 protein"
/protein_id="AAH01394.1"
/db_xref="GeneID:5269"
/db_xref="MIM:173321"
/translation="MDVLAEANGTFALNLLKTLGKDNSKNVFFSPMSMSCALAMVYMG
AKGNTAAQMAQILSFNKSGGGGDIHQGFQSLLTEVNKTGTQYLLRVANRLFGEKSCDF
LSSFRDSCQKFYQAEMEELDFISAVEKSRKHINTWVAEKTEGKIAELLSPGSVDPLTR
LVLVNAVYFRGNWDEQFDKENTEERLFKVSKNEEKPVQMMFKQSTFKKTYIGEIFTQI
LVLPYVGKELNMIIMLPDETTDLRTVEKELTYEKFVEWTRLDMMDEEEVEVSLPRFKL
EESYDMESVLRNLGMTDAFELGKADFSGMSQTDLSLSKVVHKSFVEVNEEGTEAAAAT
AAIMMMRCARFVPRFCADHPFLFFIQHSKTNGILFCGRFSSP"
BASE COUNT 405 a 349 c 400 g 360 t
ORIGIN
1 gattctccgg gatattaccg gagacggagt gttttattat tagcctttct taggtggaca
61 tttccatttg aattacaagt cctttaggct gggcgtggtg catggctgta atctcagcac
121 cttgggaggc tgaggcagga agatcacttg aggccaggcg ttggagagca gcctgggcaa
181 ggtggcaaga accttgtctc tacaaaaaaa aaagcgtctg ccatcatgga tgttctcgca
241 gaagcaaatg gcacctttgc cttaaacctt ttgaaaacgc tgggtaaaga caactcgaag
301 aatgtgtttt tctcacccat gagcatgtcc tgtgccctgg ccatggtcta catgggggca
361 aagggaaaca ccgctgcaca gatggcccag atactttctt tcaataaaag tggcggtggt
421 ggagacatcc accagggctt ccagtctctt ctcaccgaag tgaacaagac tggcacgcag
481 tacttgctta gggtggccaa caggctcttt ggggaaaagt cttgtgattt cctctcatct
541 tttagagatt cctgccaaaa attctaccaa gcagagatgg aggagcttga ctttatcagc
601 gccgtagaga agtccagaaa acacataaac acctgggtag ctgaaaagac agaaggtaaa
661 attgcggagt tgctctctcc gggctcagtg gatccattga caaggctggt tctggtgaat
721 gctgtctatt tcagaggaaa ctgggatgaa cagtttgaca aggagaacac cgaggagaga
781 ctgtttaaag tcagcaagaa tgaggagaaa cctgtgcaaa tgatgtttaa gcaatctact
841 tttaagaaga cctatatagg agaaatattt acccaaatct tggtgcttcc atatgttggc
901 aaggaactga atatgatcat catgcttccg gacgagacca ctgacttgag aacggtggag
961 aaagaactca cttacgagaa gttcgtagaa tggacgaggc tggacatgat ggatgaagag
1021 gaggtggaag tgtccctccc gcggtttaaa ctagaggaaa gctacgacat ggagagtgtc
1081 ctgcgcaacc tgggcatgac tgatgccttc gagctgggca aggcagactt ctctggaatg
1141 tcccagacag acctgtctct gtccaaggtc gtgcacaagt cttttgtgga ggtcaatgag
1201 gaaggcacgg aggctgcagc cgccacagct gccatcatga tgatgcggtg tgccagattc
1261 gtcccccgct tctgcgccga ccaccccttc cttttcttca tccagcacag caagaccaac
1321 gggattctct tctgcggccg cttttcctct ccgtgaggac agggcagtct tggtgtgcag
1381 cccctctcct ctctgtcccc tgacactcca cagtgtgcct gcaacccaag tggccttatc
1441 cgtgcagtgg tggcagttca gaaataaagg gcccatttgt gggatgccgc attcaaaaaa
1501 aaaaaaaaaa aaaa
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