LOCUS BC001384 2191 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens ubiquitin specific peptidase 39, mRNA (cDNA clone
IMAGE:3050936), partial cds.
ACCESSION BC001384
VERSION BC001384.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2191)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 1, 2003 this sequence version replaced BC001384.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: k Column: 7.
FEATURES Location/Qualifiers
source 1..2191
/db_xref="H-InvDB:HIT000030368"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3050936"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2191
/gene="USP39"
/gene_synonym="CGI-21"
/gene_synonym="HSPC332"
/gene_synonym="SAD1"
/db_xref="GeneID:10713"
CDS <1..1691
/gene="USP39"
/gene_synonym="CGI-21"
/gene_synonym="HSPC332"
/gene_synonym="SAD1"
/codon_start=3
/product="USP39 protein"
/protein_id="AAH01384.2"
/db_xref="GeneID:10713"
/translation="RSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSP
VRVKREFEPASAREAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHC
PYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHV
FLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYL
PGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGE
LMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGT
KKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDL
PTAPLYKDEKEQLIIPQVPLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFC
IKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSE
GSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDNDETNQQGA"
BASE COUNT 571 a 534 c 544 g 542 t
ORIGIN
1 gccggtctaa gcgggagtct cgcggttcca ctcgcgggaa gcgagagtct gagtcgcggg
61 gcagctccgg tcgcgtcaag cgggagcgag atcgggagcg ggagcctgag gcggcgagct
121 cccggggcag ccctgtgcgc gtgaagcggg agttcgagcc ggcgagcgcg cgcgaggccc
181 cggcttctgt tgtcccgttt gtgcgggtga agcgggagcg cgaggtcgat gaggactcgg
241 agcctgagcg ggaggtgcga gcaaagaatg gccgagtgga ttctgaggac cggaggagcc
301 gccactgccc gtacctggac accattaaca ggagtgtgct ggactttgac tttgagaaac
361 tgtgttctat ctccctctca cacatcaatg cttatgcctg tctggtgtgt ggcaagtact
421 ttcaaggccg gggtttgaag tctcacgcct acattcacag tgtccagttt agccaccatg
481 ttttcctcaa cctccacacc ctcaagtttt actgccttcc agacaactat gagatcatcg
541 attcctcatt ggaggatatc acgtatgtgt tgaagcccac tttcacaaag cagcaaattg
601 caaacttgga caagcaagcc aaattgtccc gggcatatga tggtaccact tacctgccgg
661 gtattgtggg actgaataac ataaaggcca atgattatgc caacgctgtc cttcaggctc
721 tatctaatgt tcctcctctc cggaactact ttctggaaga agacaattat aagaacatca
781 aacgtcctcc aggggatatc atgttcttgt tggtccagcg ttttggagag ctgatgagaa
841 agctctggaa ccctcgaaat ttcaaggcac atgtgtctcc ccatgagatg cttcaggcag
901 ttgtactttg cagtaagaag acttttcaga tcaccaaaca aggagatggc gttgactttc
961 tgtcttggtt tctgaatgct ctgcactcag ctctgggggg cacaaagaag aaaaagaaga
1021 ctattgtgac tgatgttttc caggggtcca tgaggatctt cactaaaaag cttccccatc
1081 ctgatctgcc agcagaagaa aaagagcagt tgctccataa tgacgagtac caggagacaa
1141 tggtggagtc cacttttatg tacctgacgc tggaccttcc tactgccccc ctctacaagg
1201 acgagaagga gcagctcatc attccccaag tgccactctt caacatcctg gctaagttca
1261 atggcatcac tgagaaggaa tataagactt acaaggagaa ctttctgaag cgcttccagc
1321 ttaccaagtt gcctccatat ctaatctttt gtatcaagag attcactaag aacaacttct
1381 ttgttgagaa gaatccaact attgtcaatt tccctattac aaatgtggat ctgagagaat
1441 acttgtctga agaagtacaa gcagtacaca agaataccac ctatgacctc attgccaaca
1501 tcgtgcatga cggcaagccc tccgagggct cctaccggat ccacgtgctt catcatggga
1561 caggcaaatg gtatgaatta caagacctcc aggtgactga catccttccc cagatgatca
1621 cactgtcaga ggcttacatt cagatttgga agaggcgaga taatgatgaa accaaccagc
1681 agggggcttg aaggaggcgt ctagggcttt gctcccaagg gctgtggctg atgatggtaa
1741 ataagaacac agaagctgta gctgaacaca ggctggctgg tgggcttcct aggccagccc
1801 agcttgtatg ggttctggct acaccagagc accaagagcc cacttgcctg ggatggcccc
1861 acactgtcac tcagctgttc tttgatcatt tttttctaga ttgatgctcc tttctcccat
1921 gcattgagct cccatctagc ttcagcaggg cagaaccctt ctccagatgt gtgtaactta
1981 tgtcttgagt atctgggagt agttgaagaa cagataattc cttccaaaca tcaagccttg
2041 ggattcttgg agcaagcaga aagccagtaa cttcgctctg ttagaggtgg aggattttcc
2101 tatggttccc cccatttcct gatttgtatt tttagatgga ttaaatagtc tcctgttttt
2161 aaaccaaaaa aaaaaaaaaa aaaaaaaaaa a
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