LOCUS BC001353 2308 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens katanin p80 (WD repeat containing) subunit B 1, mRNA
(cDNA clone MGC:8689 IMAGE:2964632), complete cds.
ACCESSION BC001353
VERSION BC001353.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2308)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2308)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC001353.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5031816.
FEATURES Location/Qualifiers
source 1..2308
/db_xref="H-InvDB:HIT000030339"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8689 IMAGE:2964632"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2308
/gene="KATNB1"
/gene_synonym="KAT"
/db_xref="GeneID:10300"
/db_xref="HGNC:HGNC:6217"
/db_xref="MIM:602703"
CDS 24..1991
/gene="KATNB1"
/gene_synonym="KAT"
/codon_start=1
/product="katanin p80 (WD repeat containing) subunit B 1"
/protein_id="AAH01353.1"
/db_xref="GeneID:10300"
/db_xref="HGNC:HGNC:6217"
/db_xref="MIM:602703"
/translation="MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCR
VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLM
GHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK
WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL
EKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVA
DLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVARDPVQDHRPLAQPLPNPSAPLR
RIYERPSTTCSKPQRVKQNSESERRSPSSEDDRDERESRAEIQNAEDYNEIFQPKNSI
SRTPPRRSEPFPAPPEDDAATAKEAAKPSPAMDVQFPVPNLEVLPRPPVVASTPAPKA
EPAIIPATRNEPIGLKASDFLPAVKIPQQAELVDEDAMSQIRKGHDTMCVVLTSRHKN
LDTVRAVWTMGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVLPQIEKL
LQSKYESYVQTGCTSLKLILQRFLPLITDMLAAPPSVGVDISREERLHKCRLCYKQLK
SISGLVKSKSGLSGRHGSTFRELHLLMASLD"
BASE COUNT 482 a 742 c 672 g 412 t
ORIGIN
1 ttcaggtgcc agccagctga aggatggcca cccctgtggt caccaagaca gcctggaagt
61 tgcaagagat cgtcgcgcat gccagcaacg tgtcctcact ggtgctgggc aaagcctccg
121 ggcggctgct ggctacaggc ggggatgact gccgcgtcaa cctgtggtcc atcaacaagc
181 ccaactgcat catgagcctg acgggccaca catccccagt ggagagcgtc cgcctcaaca
241 cccccgagga gctcatcgtg gccggctctc agtcgggctc catccgtgtc tgggacctgg
301 aagctgccaa aattcttcgc acactcatgg gacacaaagc caacatctgc agcctggatt
361 tccacccgta cggcgagttt gtagcctctg gttcccagga cacaaacatc aagctctggg
421 acatcaggag gaaaggctgt gtcttccgat acagggggca cagccaggcc gtgcggtgtc
481 tccggttcag ccccgatggg aagtggttgg cgtcggccgc agatgaccac accgtgaagc
541 tctgggatct cactgccggc aagatgatgt ctgagttccc tggtcacacg gggcctgtca
601 acgtggtcga gtttcacccc aacgagtacc tcctggcctc cggcagctct gacaggacaa
661 tccgcttctg ggacctggag aagttccagg tggtgagctg catcgaaggg gagcctgggc
721 ccgtcaggag cgtcctcttc aacccagatg gctgctgcct gtacagcggc tgccaggact
781 cactgcgtgt ctacggctgg gaacctgagc ggtgctttga tgtggtcctc gtcaactggg
841 gcaaggtggc cgacctggcc atctgcaatg accagttgat aggtgtggcc ttctcccaga
901 gcaacgtctc ctcctacgtg gtggatctga cgcgtgtcac caggactggc acggtggccc
961 gggaccctgt gcaggaccac cggcccctgg cacagccact gcccaacccc agcgcccccc
1021 tccggcgcat ctatgagcgg cccagcacaa cctgcagcaa gcctcagagg gtgaagcaga
1081 actcagagag cgagcgccgc agccccagca gcgaggatga ccgggacgag cgcgagtccc
1141 gcgcggagat ccagaacgcc gaggactaca acgagatctt ccagcccaag aacagcatca
1201 gtcggacgcc accccggaga agtgagccct tccctgcacc cccagaggac gacgcagcca
1261 cagcaaagga ggcagcaaag cccagccctg ccatggatgt gcagttcccg gtgccaaatc
1321 tggaggtcct gccccggccc ccagtggttg cttccacacc tgcacccaag gctgagcctg
1381 ccatcatccc tgccacccgg aacgagccca tcgggctgaa ggcctccgac ttcctgcccg
1441 ccgtgaagat cccccagcag gccgagctgg tggacgagga tgccatgtca cagatccgca
1501 aaggccacga caccatgtgt gtggtgctca ccagccgcca caagaacctg gacactgtgc
1561 gggctgtgtg gaccatgggc gacatcaaga cgtcggtgga ctccgctgtg gccatcaacg
1621 acctgtcggt ggtggtggac ctcctgaaca tcgtcaacca gaaagcctcc ctgtggaagc
1681 tggacctgtg caccaccgtc ctgccacaga ttgagaagct tctgcagagc aagtatgaga
1741 gctacgtcca gacgggctgc acctccctga agctgatcct gcagcggttt ctgcccctca
1801 tcacagacat gctggcggcc ccaccctctg tgggtgtgga tatcagcagg gaggagaggc
1861 tgcataagtg ccggctctgc tacaagcagc ttaagagcat cagcggcctg gtcaagagca
1921 agtcaggcct gagcggccgc catggcagta ccttccgcga gctgcacctg ctcatggcca
1981 gtctggactg aggaaagcag tgggcagggg cgctcggcag cccacagggc ctggcctcag
2041 cccccactcc tgttccttgt gcacccactg gcccatgagc ctctgcctgg cccctgctgc
2101 tgtcctgtgg ccgtcctgga ggaggtgatg ctggtccctg gccacctcta cagccctgaa
2161 ctcttgagac aactctctcc agcaatagct gcccagcttt gcccaactgt tgcttcttgg
2221 ggcagcgaac tgagccctgg ggctgctgct gtaatttata aggcaaattt tattaaattt
2281 gtaactatta aaaaaaaaaa aaaaaaaa
//