LOCUS BC001315 1668 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens small nuclear ribonucleoprotein 70kDa (U1), mRNA (cDNA
clone MGC:5527 IMAGE:3454479), complete cds.
ACCESSION BC001315
VERSION BC001315.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1668)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1668)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: b Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57634537.
FEATURES Location/Qualifiers
source 1..1668
/db_xref="H-InvDB:HIT000050396"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5527 IMAGE:3454479"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1668
/gene="SNRNP70"
/gene_synonym="U170K"
/gene_synonym="U1AP"
/gene_synonym="U1RNP"
/db_xref="GeneID:6625"
/db_xref="HGNC:HGNC:11150"
/db_xref="MIM:180740"
CDS 181..1494
/gene="SNRNP70"
/gene_synonym="U170K"
/gene_synonym="U1AP"
/gene_synonym="U1RNP"
/codon_start=1
/product="small nuclear ribonucleoprotein 70kDa (U1)"
/protein_id="AAH01315.1"
/db_xref="GeneID:6625"
/db_xref="HGNC:HGNC:11150"
/db_xref="MIM:180740"
/translation="MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPY
IREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF
KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA
YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR
YDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRR
SRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGE
LGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEA
RGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE"
BASE COUNT 375 a 456 c 591 g 246 t
ORIGIN
1 cgcgcgggtg gctgagcagc ggcctggtgc gctcgcttag cgggcgacgg aatcagacgg
61 acgtggacgc ccccggagtg gaagccgaag caggagttgt tgttgctgag gggctgccgc
121 agccgccgcg agcctccgga cagacgccag agcgaggagg gcgctacgcg acttggcaag
181 atgacccagt tcctgccgcc caaccttctg gccctctttg ccccccgtga ccctattcca
241 tacctgccac ccctggagaa actgccacat gaaaaacacc acaatcaacc ttattgtggc
301 attgcgccgt acattcgaga gtttgaggac cctcgagatg cccctcctcc aactcgtgct
361 gaaacccgag aggagcgcat ggagaggaaa agacgggaaa agattgagcg gcgacagcaa
421 gaagtggaga cagagcttaa aatgtgggac cctcacaatg atcccaatgc tcagggggat
481 gccttcaaga ctctcttcgt ggcgagagtg aattatgaca caacagaatc caagctccgg
541 agagagtttg aggtgtacgg acctatcaaa agaatacaca tggtctacag taagcggtca
601 ggaaagcccc gtggctatgc cttcatcgag tacgaacacg agcgagacat gcactccgct
661 tacaaacacg cagatggcaa gaagattgat ggcaggaggg tccttgtgga cgtggagagg
721 ggccgaaccg tgaagggctg gaggccccgg cggctaggag gaggcctcgg tggtaccaga
781 agaggagggg ctgatgtgaa catccggcat tcaggccgcg atgacacctc ccgctacgat
841 gagaggcccg gcccctcccc gcttccgcac agggaccggg accgggaccg tgagcgggag
901 cgcagagagc ggagccggga gcgagacaag gagcgagaac ggcgacgctc ccgctcccgg
961 gaccggcgga ggcgctcacg gagtcgcgac aaggaggagc ggaggcgctc cagggagcgg
1021 agcaaggaca aggaccggga ccggaagcgg cgaagcagcc ggagtcggga gcgggcccgg
1081 cgggagcggg agcgcaagga ggagctgcgt ggtggcggtg gcgacatggc ggagccctcc
1141 gaggcgggtg acgcgccccc tgatgatggg cctccagggg agctcgggcc tgacggccct
1201 gacggtccag aggaaaaggg ccgggatcgt gaccgggagc gacggcggag ccaccggagc
1261 gagcgcgagc ggcgccggga ccgggatcgt gaccgtgacc gtgaccgcga gcacaaacgg
1321 ggggagcggg gcagtgagcg gggcagggat gaggcccgag gtgggggcgg tggccaggac
1381 aacgggctgg agggtctggg caacgacagc cgagacatgt acatggagtc tgagggcggc
1441 gacggctacc tggctccgga gaatgggtat ttgatggagg ctgcgccgga gtgaagaggt
1501 cgtcctctcc atctgctgtg tttggacgcg ttcctgccca gccccttgct gtcatcccct
1561 cccccaacct tggccacttg agtttgtcct ccaagggtag gtgtctcatt tgttctggcc
1621 ccttggattt aaaaataaaa ttaatttcct gttaaaaaaa aaaaaaaa
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