LOCUS BC001269 1804 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens speckle-type POZ protein, mRNA (cDNA clone MGC:5068
IMAGE:3461565), complete cds.
ACCESSION BC001269
VERSION BC001269.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1804)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1804)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56119172.
FEATURES Location/Qualifiers
source 1..1804
/db_xref="H-InvDB:HIT000030275"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5068 IMAGE:3461565"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1804
/gene="SPOP"
/gene_synonym="TEF2"
/db_xref="GeneID:8405"
/db_xref="HGNC:HGNC:11254"
/db_xref="MIM:602650"
CDS 304..1428
/gene="SPOP"
/gene_synonym="TEF2"
/codon_start=1
/product="speckle-type POZ protein"
/protein_id="AAH01269.1"
/db_xref="GeneID:8405"
/db_xref="HGNC:HGNC:11254"
/db_xref="MIM:602650"
/translation="MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFC
REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKF
KFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE
VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAIL
AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA
ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLE
TSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS"
BASE COUNT 459 a 410 c 491 g 444 t
ORIGIN
1 cgctccgagt gtgtgtgtat ttgtgtatcg gcggtcccgc aggtcccgga tgttgcggac
61 agtatgaggc aagcgcaggg ggacggggac cagcagctgt cgccgccgct ctcagatcga
121 gtcttgctct gtcacccggg ctggagtgca gtggcgcgat ctcagctcac tgccaccttt
181 gcctcctggg ttcaagcgat tcttctgcct cagcctcccg agtagctggg attacagggt
241 gaagagggaa cagaaatctt tgccccctga ctttggaaat ctcgtttaac cttcaaactg
301 gcgatgtcaa gggttccaag tcctccacct ccggcagaaa tgtcgagtgg ccccgtagct
361 gagagttggt gctacacaca gatcaaggta gtgaaattct cctacatgtg gaccatcaat
421 aactttagct tttgccggga ggaaatgggt gaagtcatta aaagttctac attttcatca
481 ggagcaaatg ataaactgaa atggtgtttg cgagtaaacc ccaaagggtt agatgaagaa
541 agcaaagatt acctgtcact ttacctgtta ctggtcagct gtccaaagag tgaagttcgg
601 gcaaaattca aattctccat cctgaatgcc aagggagaag aaaccaaagc tatggagagt
661 caacgggcat ataggtttgt gcaaggcaaa gactggggat tcaagaaatt catccgtaga
721 gattttcttt tggatgaggc caacgggctt ctccctgatg acaagcttac cctcttctgc
781 gaggtgagtg ttgtgcaaga ttctgtcaac atttctggcc agaataccat gaacatggta
841 aaggttcctg agtgccggct ggcagatgag ttaggaggac tgtgggagaa ttcccggttc
901 acagactgct gcttgtgtgt tgccggccag gaattccagg ctcacaaggc tatcttagca
961 gctcgttctc cggtttttag tgccatgttt gaacatgaaa tggaggagag caaaaagaat
1021 cgagttgaaa tcaatgatgt ggagcctgaa gtttttaagg aaatgatgtg cttcatttac
1081 acggggaagg ctccaaacct cgacaaaatg gctgatgatt tgctggcagc tgctgacaag
1141 tatgccctgg agcgcttaaa ggtcatgtgt gaggatgccc tctgcagtaa cctgtccgtg
1201 gagaacgctg cagaaattct catcctggcc gacctccaca gtgcagatca gttgaaaact
1261 caggcagtgg atttcatcaa ctatcatgct tcggatgtct tggagacctc tgggtggaag
1321 tcaatggtgg tgtcacatcc ccacttggtg gctgaggcat accgctctct ggcttcagca
1381 cagtgccctt ttctgggacc cccacgcaaa cgcctgaagc aatcctaaga tcctgcttgt
1441 tgtaagactc cgtttaattt ccagaagcag cagccactgt tgctgccact gaccaccagg
1501 tagacagcgc aatctgtgga gcttttactc tgttgtgagg ggaagagact gcattgtggc
1561 cccagacttt taaaacagca ctaaataact tgggggaaac ggggggaggg aaaatgaaat
1621 gaaaaccctg ttgctgcgtc actgtgttcc ctttggcctg gctgagtttg atactgtggg
1681 gattcagttt aggcgctggc ccgaggatat cccagcggtg gtacttcgga gacacctgtc
1741 tgcatctgac tgagcagaac aaatcgtcag gtgcctggag caaaaaggaa aaaaaaaaaa
1801 aaaa
//