LOCUS BC001235 1886 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, mRNA (cDNA
clone MGC:4909 IMAGE:3456547), complete cds.
ACCESSION BC001235
VERSION BC001235.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1886)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1886)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: d Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51094102.
FEATURES Location/Qualifiers
source 1..1886
/db_xref="H-InvDB:HIT000030243"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4909 IMAGE:3456547"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1886
/gene="DDX56"
/gene_synonym="DDX21"
/gene_synonym="NOH61"
/db_xref="GeneID:54606"
/db_xref="HGNC:HGNC:18193"
/db_xref="MIM:608023"
CDS 31..1674
/gene="DDX56"
/gene_synonym="DDX21"
/gene_synonym="NOH61"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
/protein_id="AAH01235.1"
/db_xref="GeneID:54606"
/db_xref="HGNC:HGNC:18193"
/db_xref="MIM:608023"
/translation="MEDSEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEG
KDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMI
QQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSL
ELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTL
KLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRL
FLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPK
GDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPT
EQFHLGKIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEI
KEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPH
KKRKKLSSSCRKAKRAKSQNPLRSFKHKGKKFRPTAKPS"
BASE COUNT 426 a 538 c 509 g 413 t
ORIGIN
1 cgcgtgcgtg ctgcgctact gagcagcgcc atggaggact ctgaagcact gggcttcgaa
61 cacatgggcc tcgatccccg gctccttcag gctgtcaccg atctgggctg gtcgcgacct
121 acgctgatcc aggagaaggc catcccactg gccctagaag ggaaggacct cctggctcgg
181 gcccgcacgg gctccgggaa gacggccgct tatgctattc cgatgctgca gctgttgctc
241 cataggaagg cgacaggtcc ggtggtagaa caggcagtga gaggccttgt tcttgttcct
301 accaaggagc tggcacggca agcacagtcc atgattcagc agctggctac ctactgtgct
361 cgggatgtcc gagtggccaa tgtctcagct gctgaagact cagtctctca gagagctgtg
421 ctgatggaga agccagatgt ggtagtaggg accccatctc gcatattaag ccacttgcag
481 caagacagcc tgaaacttcg tgactccctg gagcttttgg tggtggacga agctgacctt
541 cttttttcct ttggctttga agaagagctc aagagtctcc tctgtcactt gccccggatt
601 taccaggctt ttctcatgtc agctactttt aacgaggacg tacaagcact caaggagctg
661 atattacata acccggttac ccttaagtta caggagtccc agctgcctgg gccagaccag
721 ttacagcagt ttcaggtggt ctgtgagact gaggaagaca aattcctcct gctgtatgcc
781 ctgctcaagc tgtcattgat tcggggcaag tctctgctct ttgtcaacac tctagaacgg
841 agttaccggc tacgcctgtt cttggaacag ttcagcatcc ccacctgtgt gctcaatgga
901 gagcttccac tgcgctccag gtgccacatc atctcacagt tcaaccaagg cttctacgac
961 tgtgtcatag caactgatgc tgaagtcctg ggggccccag tcaagggcaa gcgtcggggc
1021 cgagggccca aaggggacaa ggcctctgat ccggaagcag gtgtggcccg gggcatagac
1081 ttccaccatg tgtctgctgt gctcaacttt gatcttcccc caacccctga ggcctacatc
1141 catcgagctg gcaggacagc acgcgctaac aacccaggca tagtcttaac ctttgtgctt
1201 cccacggagc agttccactt aggcaagatt gaggagcttc tcagtggaga gaacaggggc
1261 cccattctgc tcccctacca gttccggatg gaggagatcg agggcttccg ctatcgctgc
1321 agggatgcca tgcgctcagt gactaagcag gccattcggg aggcaagatt gaaggagatc
1381 aaggaagagc ttctgcattc tgagaagctt aagacatact ttgaagacaa ccctagggac
1441 ctccagctgc tgcggcatga cctacctttg caccccgcag tggtgaagcc ccacctgggc
1501 catgttcctg actacctggt tcctcctgct ctccgtggcc tggtacgccc tcacaagaag
1561 cggaagaagc tgtcttcctc ttgtaggaag gccaagagag caaagtccca gaacccactg
1621 cgcagcttca agcacaaagg aaagaaattc agacccacag ccaagccctc ctgaggttgt
1681 tgggcctctc tggagctgag cacattgtgg agcacaggct tacacccttc gtggacaggc
1741 gaggctctgg tgcttactgc acagcctgaa cagacagttc tggggccggc agtgctgggc
1801 cctttagctc cttggcactt ccaagctggc atcttgcccc ttgacaacag aataaaaatt
1861 ttagctgccc caaaaaaaaa aaaaaa
//