LOCUS BC001187 1309 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens COP9 constitutive photomorphogenic homolog subunit 5
(Arabidopsis), mRNA (cDNA clone MGC:3149 IMAGE:3354130), complete
cds.
ACCESSION BC001187
VERSION BC001187.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1309)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1309)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: h Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1309
/db_xref="H-InvDB:HIT000030207"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3149 IMAGE:3354130"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1309
/gene="COPS5"
/gene_synonym="CSN5"
/gene_synonym="JAB1"
/gene_synonym="MGC3149"
/gene_synonym="MOV-34"
/gene_synonym="SGN5"
/db_xref="GeneID:10987"
/db_xref="HGNC:HGNC:2240"
/db_xref="MIM:604850"
CDS 136..1140
/gene="COPS5"
/gene_synonym="CSN5"
/gene_synonym="JAB1"
/gene_synonym="MGC3149"
/gene_synonym="MOV-34"
/gene_synonym="SGN5"
/codon_start=1
/product="COP9 constitutive photomorphogenic homolog
subunit 5 (Arabidopsis)"
/protein_id="AAH01187.1"
/db_xref="GeneID:10987"
/db_xref="HGNC:HGNC:2240"
/db_xref="MIM:604850"
/translation="MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKP
WTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEG
TETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQ
FQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHC
KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQS
EAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS
"
BASE COUNT 413 a 259 c 310 g 327 t
ORIGIN
1 gtgtcatggc tgccccaaga gtctaggtaa gagtttgttc ccgtggtgcg gagggtcaag
61 gcccacaccc ggaaacctag cgaggtaaag ttgcgtcttg gttgtagaga cgacaacttc
121 tccgcttcct cggcgatggc ggcgtccggg agcggtatgg cccagaaaac ctgggaactg
181 gccaacaaca tgcaggaagc tcagagtatc gatgaaatct acaaatacga caagaaacag
241 cagcaagaaa tcctggcggc gaagccctgg actaaggatc accattactt taagtactgc
301 aaaatctcag cattggctct gctgaagatg gtgatgcatg ccagatcggg aggcaacttg
361 gaagtgatgg gtctgatgct aggaaaggtg gatggtgaaa ccatgatcat tatggacagt
421 tttgctttgc ctgtggaggg cactgaaacc cgagtaaatg ctcaggctgc tgcatatgaa
481 tacatggctg catacataga aaatgcaaaa caggttggcc gccttgaaaa tgcaatcggg
541 tggtatcata gccaccctgg ctatggctgc tggctttctg ggattgatgt tagtactcag
601 atgctcaatc agcagttcca ggaaccattt gtagcagtgg tgattgatcc aacaagaaca
661 atatccgcag ggaaagtgaa tcttggcgcc tttaggacat acccaaaggg ctacaaacct
721 cctgatgaag gaccttctga gtaccagact attccactta ataaaataga agattttggt
781 gtacactgca aacaatatta tgccttagaa gtctcatatt tcaaatcctc tttggatcgc
841 aaattgcttg agctgttgtg gaataaatac tgggtgaata cgttgagttc ttctagcttg
901 cttactaatg cagactatac cactggtcag gtctttgatt tgtctgaaaa gttagagcag
961 tcagaagccc agctgggacg agggagtttc atgttgggtt tagaaacgca tgaccgaaaa
1021 tcagaagaca aacttgccaa agctacaaga gacagctgta aaactaccat agaagctatc
1081 catggattga tgtctcaggt tattaaggat aaactgttta atcaaattaa catctcttaa
1141 acagtctctg agaagtactt tacctgaaag acagtatgag aaaaatattc aagtaacact
1201 ttaaaaccag ttacccaaaa tctgattaga agtataaggt gctctgaagt gtcctaaata
1261 ttaatatcct gtaataaagc tctttaaaat gaaaaaaaaa aaaaaaaaa
//