LOCUS BC001186 2915 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin beta 5, mRNA (cDNA clone MGC:2649
IMAGE:3528826), complete cds.
ACCESSION BC001186
VERSION BC001186.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2915)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2915)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: o Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14195611.
FEATURES Location/Qualifiers
source 1..2915
/db_xref="H-InvDB:HIT000030206"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2649 IMAGE:3528826"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2915
/gene="PCDHB5"
/gene_synonym="DKFZP586B0217"
/gene_synonym="PCDH-BETA5"
/db_xref="GeneID:26167"
/db_xref="HGNC:HGNC:8690"
/db_xref="MIM:606331"
CDS 208..2595
/gene="PCDHB5"
/gene_synonym="DKFZP586B0217"
/gene_synonym="PCDH-BETA5"
/codon_start=1
/product="protocadherin beta 5"
/protein_id="AAH01186.1"
/db_xref="GeneID:26167"
/db_xref="HGNC:HGNC:8690"
/db_xref="MIM:606331"
/translation="METALAKTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYS
VANLAKDLGLGVGELATRGARMHYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPC
ILHFQLLLENPVQFFQTDLQLTDINDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDF
DIGSNTVQNYTISPNSHFHVATHNRGDGRKYPELVLDKALDREERPELSLTLTALDGG
APPRSGTTTIRIVVLDNNDNAPEFLQSFYEVQVPENSPLNSLVVVVSARDLDAGAYGS
VAYALFQGDEVTQPFVIDEKTAEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAI
EVVDVNDNAPELTMSTLSSPTPENAPETVVAVFSVSDPDSGDNGRMICSIQNDLPFLL
KPTLKNFYTLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAF
TQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQNPHLRLASLVSINAD
NGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPFVLYPLQN
GSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFSMWAHNGEVR
TARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQA
DSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAPVGRCSVPEGPFPGHLVDVSG
TGTLSQSYHYEVCLTGDSGAGEFKFLKPIIPNLLPQGAGEEIGKTAAFRNSFGLN"
BASE COUNT 704 a 780 c 763 g 668 t
ORIGIN
1 gcggataact cagacgccat taagctgggg aatccaaact ctaaaagaag gacgcatttt
61 aggtaagatc tagtggctag atcttcaggg tgggcttcgt tcttgtggaa atcagtcaag
121 aaagatcgga ttcgcggtta tttatgcaaa tcatctgggt ggattgtgta cggagttaaa
181 ctgcgccttc tggaccgggt ctgaacaatg gagactgcgc tagcaaaaac gccacagaaa
241 aggcaagtta tgtttcttgc tatattgttg cttttgtggg aggctggctc tgaggcagtt
301 aggtattcca taccagaaga aacagaaagt ggctattctg tggccaacct ggcaaaagac
361 ctgggtcttg gggtggggga actggccact cggggcgcgc gaatgcatta caaaggaaac
421 aaagagctct tgcagcttga tataaagacc ggcaatttgc ttctatatga aaaactagac
481 cgggaggtga tgtgcggggc gacagaaccc tgtatattgc atttccagct cttactagaa
541 aatccagtgc agttttttca aactgatctg cagctcacag atataaatga ccatgcccca
601 gagttcccag agaaggaaat gctcctaaaa atcccagaga gcacccagcc agggactgtg
661 tttcccttaa aaatagccca ggactttgac ataggtagca acactgttca gaactacaca
721 atcagcccaa attcacactt tcatgttgct acgcataatc gcggagatgg cagaaaatac
781 ccagagctgg tgctggacaa agcgctggac cgggaggagc ggcctgagct cagcttaaca
841 ctcactgcac tggacggtgg ggctccgccc aggtccggga ccaccacaat tcgcattgtc
901 gtcttggata ataatgacaa cgcccccgaa tttttacaat cattctatga ggtacaggtg
961 cccgagaaca gcccccttaa ctccttagtt gtcgttgtct ccgctcgaga tttagatgca
1021 ggagcatatg ggagtgtagc ctatgctcta ttccaaggcg atgaagttac tcaaccattt
1081 gtaatagacg agaaaacagc agaaattcgc ctgaaaaggg cattggattt cgaggcaact
1141 ccatattata acgtggaaat tgtagccaca gatggtgggg gcctttcagg aaaatgcact
1201 gtggctatag aagtggtgga tgtgaatgac aacgcccctg aactcaccat gtctacgctc
1261 tccagcccta ccccagaaaa tgccccggaa actgtagttg ccgttttcag tgtttctgat
1321 ccagactccg gggacaacgg taggatgatt tgctccatcc agaatgatct cccctttctt
1381 ttgaagccca cattaaaaaa cttttacacc ctagtgacac agagaacact ggacagagag
1441 agccaagccg agtacaacat caccatcact gtcaccgaca tggggacacc caggctgaaa
1501 accgagcaca acataacggt cctggtctcc gacgtcaatg acaacgcccc cgccttcacc
1561 caaacctcct acaccctgtt cgtccgagag aacaacagcc ccgccctgca catcggcagt
1621 gtcagcgcca cagacagaga ctcaggcacc aacgcccagg tcacctactc gctgctgccg
1681 ccccagaatc cacacctgcg cctcgcctcc ctggtctcca tcaacgcgga caacggccac
1741 ctgtttgccc tcaggtcgct ggactacgag gccctgcagg cgttcgagtt ccgcgtggga
1801 gccacagacc gcggctcccc ggcgctgagc agcgaggcgc tggtgcgcgt gctggtgctg
1861 gacgccaacg acaactcgcc cttcgtgctg tatccgctgc agaacggctc ggcgccttgc
1921 accgagctgg tgccccgggc ggccgagccg ggctacctgg tgaccaaggt ggtggcggtg
1981 gacggtgact cgggccagaa cgcctggctg tcgtaccagc tgctcaaggc cacggagccc
2041 gggctgttca gcatgtgggc gcacaatggc gaggtgcgca ccgccaggct gctgagcgag
2101 cgcgacgcgg ccaagcacag gctggtggtg ctggtcaagg acaatggcga gcctccgcgc
2161 tcggccaccg ccacgctgca cgtgctcctg gtggacggct tctcccagcc ctacctgccg
2221 ctgccggagg cggccccggc ccaggcccag gccgactcgc tcactgtcta cctggtggtg
2281 gcattggcct cggtgtcgtc gctcttcctc ttttcggtgc tcctgttcgt ggcagtgcgg
2341 ctgtgcagga ggagcagggc ggccccggtc ggtcgctgct cggtgcccga gggccccttt
2401 ccagggcatc tggtggacgt gagcggcacc gggaccctat cccagagcta ccactacgag
2461 gtgtgtttga ccggagactc aggggccggc gagttcaagt tcctgaagcc gattattcct
2521 aaccttttgc cccagggcgc tggtgaagaa atagggaaaa ctgctgcctt ccggaatagc
2581 tttggattaa attagagatc tcgtgatgac gcgttgtttt ctgccattta tcccaaactt
2641 tttcagatct agaattcgag agtgtcatgg acaaaaattt caccttgaga ttgagctttt
2701 atttcccttt ttaatggatt tgtctgttga acttcatgct gtccaagtgt tgaaaagtca
2761 attttatttc attgcattta tttacatagt gtcattccaa atccatgcat gctgttgatt
2821 ttcctgagat ttttttctct tcttgttggt atttgttgtg ataaaccacc ttaataaaat
2881 caagtattaa ttttaaaaaa aaaaaaaaaa aaaaa
//