LOCUS BC001179 4412 bp mRNA linear HUM 21-JUL-2008
DEFINITION Homo sapiens high density lipoprotein binding protein, mRNA (cDNA
clone MGC:2301 IMAGE:3528704), complete cds.
ACCESSION BC001179
VERSION BC001179.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4412)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4412)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42716279.
FEATURES Location/Qualifiers
source 1..4412
/db_xref="H-InvDB:HIT000030200"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2301 IMAGE:3528704"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4412
/gene="HDLBP"
/gene_synonym="HBP"
/gene_synonym="PRO2900"
/db_xref="GeneID:3069"
/db_xref="HGNC:HGNC:4857"
/db_xref="MIM:142695"
CDS 202..4008
/gene="HDLBP"
/gene_synonym="HBP"
/gene_synonym="PRO2900"
/codon_start=1
/product="high density lipoprotein binding protein"
/protein_id="AAH01179.1"
/db_xref="GeneID:3069"
/db_xref="HGNC:HGNC:4857"
/db_xref="MIM:142695"
/translation="MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAF
PPLPEKAACLESAQEPAGAWGNKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAK
ICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKARKDIVARLQTQASATVAIPKE
HHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAE
QDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQ
LAQAVARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPS
DSISETVILRGEPEKLGQALTEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQ
QMPKVHIEFTEGEDKITLEGPTEDVNVAQEQIEGMVKDLINRMDYVEINIDHKFHRHL
IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELASRMENER
TKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPKNEVEKC
TKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNS
ETIIITGKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEE
CGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHK
FLIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITIIGKEDAVREAQKELEALIQNLD
NVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRSGTQSDKVTLKGAKDCV
EAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREE
NAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVP
VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRA
KAGLLERVKELQAEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF
PDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQMVSEDVPLDHRVHARIIGAR
GKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADVVDS
EALQVYMKPPAHEEAKAPSRGFVVRDAPWTASSSEKAPDMSSSEEFPSFGAQVAPKTL
PWGPKR"
BASE COUNT 1229 a 1137 c 1175 g 871 t
ORIGIN
1 gtagcctctt ctcctttacc aagatggcgg cttgtccctg tttcgccaca gttcctacct
61 tatgagctcg gttttcttat gcttataaga gtggaacagc aaaagctggc aggctgacag
121 aggcggcctc aggacggacc ttctggctac tgaccgtttt gctgtggttt tcccggattg
181 tgtgtaggtg tgagatcaac catgagttcc gttgcagttt tgacccaaga gagttttgct
241 gaacaccgaa gtgggctggt tccgcaacaa atcaaagttg ccactctaaa ttcagaagag
301 gagagcgacc ctccaaccta caaggatgcc ttccctccac ttcctgagaa agctgcttgc
361 ctggaaagtg cccaggaacc cgctggagcc tgggggaaca agatccgacc catcaaggct
421 tctgtcatca ctcaggtgtt ccatgtaccc ctggaggaga gaaaatacaa ggatatgaac
481 cagtttggag aaggtgaaca agcaaaaatc tgccttgaga tcatgcagag aactggtgct
541 cacttggagc tgtctttggc caaagaccaa ggcctctcca tcatggtgtc aggaaagctg
601 gatgctgtca tgaaagctcg gaaggacatt gttgctagac tgcagactca ggcctcagca
661 actgttgcca ttcccaaaga acaccatcgc tttgttattg gcaaaaatgg agagaaactg
721 caagacttgg agctaaaaac tgcaaccaaa atccagatcc cacgcccaga tgaccccagc
781 aatcagatca agatcactgg caccaaagag ggcatcgaga aagctcgcca tgaagtctta
841 ctcatctctg ccgagcagga caaacgtgct gtggagaggc tagaagtaga aaaggcattc
901 caccccttca tcgctgggcc gtataataga ctggttggcg agatcatgca ggagacaggc
961 acgcgcatca acatcccccc acccagcgtg aaccggacag agattgtctt cactggagag
1021 aaggaacagt tggctcaggc tgtggctcgc atcaagaaga tttatgagga gaagaaaaag
1081 aagactacaa ccattgcagt ggaagtgaag aaatcccaac acaagtatgt cattgggccc
1141 aagggcaatt cattgcagga gatccttgag agaactggag tttccgttga gatcccaccc
1201 tcagacagca tctctgagac tgtaatactt cgaggcgaac ctgaaaagtt aggtcaggcg
1261 ttgactgaag tctatgccaa ggccaatagc ttcaccgtct cctctgtcgc cgccccttcc
1321 tggcttcacc gtttcatcat tggcaagaaa gggcagaacc tggccaaaat cactcagcag
1381 atgccaaagg ttcacatcga gttcacagag ggcgaagaca agatcaccct ggagggccct
1441 acagaggatg tcaatgtggc ccaggaacag atagaaggca tggtcaaaga tttgattaac
1501 cggatggact atgtggagat caacatcgac cacaagttcc acaggcacct cattgggaag
1561 agcggtgcca acataaacag aatcaaagac cagtacaagg tgtccgtgcg catccctcct
1621 gacagtgaga agagcaattt gatccgcatc gagggggacc cacagggcgt gcagcaggcc
1681 aagcgagagc tgctggagct tgcatctcgc atggaaaatg agcgtaccaa ggatctaatc
1741 attgagcaaa gatttcatcg cacaatcatt gggcagaagg gtgaacggat ccgtgaaatt
1801 cgtgacaaat tcccagaggt catcattaac tttccagacc cagcacaaaa aagtgacatt
1861 gtccagctca gaggacctaa gaatgaggtg gaaaaatgca caaaatacat gcagaagatg
1921 gtggcagatc tggtggaaaa tagctattca atttctgttc cgatcttcaa acagtttcac
1981 aagaatatca ttgggaaagg aggcgcaaac attaaaaaga ttcgtgaaga aagcaacacc
2041 aaaatcgacc ttccagcaga gaatagcaat tcagagacca ttatcatcac aggcaagcga
2101 gccaactgcg aagctgcccg gagcaggatt ctgtctattc agaaagacct ggccaacata
2161 gccgaggtag aggtctccat ccctgccaag ctgcacaact ccctcattgg caccaagggc
2221 cgtctgatcc gctccatcat ggaggagtgc ggcggggtcc acattcactt tcccgtggaa
2281 ggttcaggaa gcgacaccgt tgttatcagg ggcccttcct cggatgtgga gaaggccaag
2341 aagcagctcc tgcatctggc ggaggagaag caaaccaaga gtttcactgt tgacatccgc
2401 gccaagccag aataccacaa attcctcatc ggcaaggggg gcggcaaaat tcgcaaggtg
2461 cgcgacagca ctggagcacg tgtcatcttc cctgcggctg aggacaagga ccaggacctg
2521 atcaccatca ttggaaagga ggacgccgtc cgagaggcac agaaggagct ggaggccttg
2581 atccaaaacc tggataatgt ggtggaagac tccatgctgg tggaccccaa gcaccaccgc
2641 cacttcgtca tccgcagagg ccaggtcttg cgggagattg ctgaagagta tggcggggtg
2701 atggtcagct tcccacgctc tggcacacag agcgacaaag tcaccctcaa gggcgccaag
2761 gactgtgtgg aggcagccaa gaaacgcatt caggagatca ttgaggacct ggaagctcag
2821 gtgacattag aatgtgctat accccagaaa ttccatcgat ctgtcatggg ccccaaaggt
2881 tccagaatcc agcagattac tcgggatttc agtgttcaaa ttaaattccc agacagagag
2941 gagaacgcag ttcacagtac agagccagtt gtccaggaga atggggacga agctggggag
3001 gggagagagg ctaaagattg tgaccccggc tctccaagga ggtgtgacat catcatcatc
3061 tctggccgga aagaaaagtg tgaggctgcc aaggaagctc tggaggcatt ggttcctgtc
3121 accattgaag tagaggtgcc ctttgacctt caccgttacg ttattgggca gaaaggaagt
3181 gggatccgca agatgatgga tgagtttgag gtgaacatac atgtcccggc acctgagctg
3241 cagtctgaca tcatcgccat cacgggcctc gctgcaaatt tggaccgggc caaggctgga
3301 ctgctggagc gtgtgaagga gctacaggcc gagcaggagg accgggcttt aaggagtttt
3361 aagctgagtg tcactgtaga ccccaaatac catcccaaga ttatcgggag aaagggggca
3421 gtaattaccc aaatccggtt ggagcatgac gtgaacatcc agtttcctga taaggacgat
3481 gggaaccagc cccaggacca aattaccatc acagggtacg aaaagaacac agaagctgcc
3541 agggatgcta tactgagaat tgtgggtgaa cttgagcaga tggtttctga ggacgtcccg
3601 ctggaccacc gcgttcacgc ccgcatcatt ggtgcccgcg gcaaagccat tcgcaaaatc
3661 atggacgaat tcaaggtgga cattcgcttc ccacagagcg gagccccaga ccccaactgc
3721 gtcactgtga cggggctccc agagaatgtg gaggaagcca tcgaccacat cctcaatctg
3781 gaggaggaat acctagctga cgtggtggac agtgaggcgc tgcaggtata catgaaaccc
3841 ccagcacacg aagaggccaa ggcaccttcc agaggctttg tggtgcggga cgcaccctgg
3901 accgccagca gcagtgagaa ggctcctgac atgagcagct ctgaggaatt tcccagcttt
3961 ggggctcagg tggctcccaa gaccctccct tggggcccca aacgataatg atcaaaaaga
4021 acagaaccct ctccagcctg ctgacccgaa cccaaccaca caatggtttg tctcaatctg
4081 acccagcggc tggaccctcc gtaaattgtt gacgctcttc ccccttcccg aggtcccgca
4141 gggagcctag cgcctggctg tgtgtgcggc cgctcctcca ggcctggccg tgcccgctca
4201 ggacctgctc cactgtttaa cactaaacca aggtcatgag cattcgtgct aagataacag
4261 actccagctc ctggtccacc cggcatgtca gtcagcactc tggccttcat cacgagagct
4321 ccgcagccgt ggctaggatt ccacttcctg tgtcatgacc tcaggaaata aacgtccttg
4381 actttataaa agccaaaaaa aaaaaaaaaa aa
//