LOCUS BC001167 2875 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinoid X receptor, beta, mRNA (cDNA clone MGC:1831
IMAGE:3502936), complete cds.
ACCESSION BC001167
VERSION BC001167.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2875)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2875)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: h Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27436942.
FEATURES Location/Qualifiers
source 1..2875
/db_xref="H-InvDB:HIT000030190_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1831 IMAGE:3502936"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2875
/gene="RXRB"
/gene_synonym="DAUDI6"
/gene_synonym="H-2RIIBP"
/gene_synonym="MGC1831"
/gene_synonym="NR2B2"
/gene_synonym="RCoR-1"
/db_xref="GeneID:6257"
/db_xref="HGNC:HGNC:10478"
/db_xref="MIM:180246"
CDS 180..1781
/gene="RXRB"
/gene_synonym="DAUDI6"
/gene_synonym="H-2RIIBP"
/gene_synonym="MGC1831"
/gene_synonym="NR2B2"
/gene_synonym="RCoR-1"
/codon_start=1
/product="retinoid X receptor, beta"
/protein_id="AAH01167.1"
/db_xref="GeneID:6257"
/db_xref="HGNC:HGNC:10478"
/db_xref="MIM:180246"
/translation="MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLD
PAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPG
PPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSP
QINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYG
VYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQ
EERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPND
PVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVR
DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPD
AKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLF
FFKLIGDTPIDTFLMEMLEAPHQLA"
BASE COUNT 593 a 834 c 839 g 609 t
ORIGIN
1 caaagatggc tgccacattg gcgctgtcat tttggtactg agcagagcga cgggcttaat
61 tcgacccaat ccaggccaga gtctttctct caggggcttc ctcgtgctca gctaatcctc
121 cgatcaatcc ttgggaatcc ctgggacctc ttcggtatcc ctactctcag ccagggatca
181 tgtcttgggc cgctcgcccg cccttcctcc ctcagcggca tgccgcaggg cagtgtgggc
241 cggtgggggt gcgaaaagaa atgcattgtg gggtcgcgtc ccggtggcgg cggcgacggc
301 cctggctgga tcccgcagcg gcggcggcgg cggcggtggc aggcggagaa caacaaaccc
361 cggagccgga gccaggggag gctggacggg acgggatggg cgacagcggg cgggactccc
421 gaagcccaga cagctcctcc ccaaatcccc ttccccaggg agtccctccc ccttctcctc
481 ctgggccacc cctaccccct tcaacagctc catcccttgg aggctctggg gccccacccc
541 cacccccgat gccaccaccc ccactgggct ctccctttcc agtcatcagt tcttccatgg
601 ggtcccctgg tctgccccct ccagctcccc caggattctc cgggcctgtc agcagccccc
661 agattaactc aacagtgtca ctccctgggg gtgggtctgg cccccctgaa gatgtgaagc
721 caccagtctt aggggtccgg ggcctgcact gtccaccccc tccaggtggc cctggggctg
781 gcaaacggct atgtgcaatc tgcggggaca gaagctcagg caaacactac ggggtttaca
841 gctgtgaggg ttgcaagggc ttcttcaaac gcaccatccg caaagacctt acatactctt
901 gccgggacaa caaagactgc acagtggaca agcgccagcg gaaccgctgt cagtactgcc
961 gctatcagaa gtgcctggcc actggcatga agagggaggc ggtacaggag gagcgtcagc
1021 ggggaaagga caaggatggg gatggggagg gggctggggg agcccccgag gagatgcctg
1081 tggacaggat cctggaggca gagcttgctg tggaacagaa gagtgaccag ggcgttgagg
1141 gtcctggggg aaccgggggt agcggcagca gcccaaatga ccctgtgact aacatctgtc
1201 aggcagctga caaacagcta ttcacgcttg ttgagtgggc gaagaggatc ccacactttt
1261 cctccttgcc tctggatgat caggtcatat tgctgcgggc aggctggaat gaactcctca
1321 ttgcctcctt ttcacaccga tccattgatg ttcgagatgg catcctcctt gccacaggtc
1381 ttcacgtgca ccgcaactca gcccattcag caggagtagg agccatcttt gatcgggtgc
1441 tgacagagct agtgtccaaa atgcgtgaca tgaggatgga caagacagag cttggctgcc
1501 tgagggcaat cattctgttt aatccagatg ccaagggcct ctccaaccct agtgaggtgg
1561 aggtcctgcg ggagaaagtg tatgcatcac tggagaccta ctgcaaacag aagtaccctg
1621 agcagcaggg acggtttgcc aagctgctgc tacgtcttcc tgccctccgg tccattggcc
1681 ttaagtgtct agagcatctg tttttcttca agctcattgg tgacaccccc atcgacacct
1741 tcctcatgga gatgcttgag gctccccatc aactggcctg agctcagacc cagacgtggt
1801 gcttctcaca ctggaggagc acacatccaa gagggactcc aagccctggg gcagggtggg
1861 gggccatgtt cccagaacct tgatggggtg agaagtacag ggcagaacca agaacataaa
1921 ccctccaagg gatctgcttg atatcccaag ttggaaggga ccccagatac ctgtgaggac
1981 tggttgtctc tcttcggtgg ccttgagtct ctgaatttgt cggggtctcc catgatttgg
2041 ggtgatttct caccctctgt ccttccccca gcacaaagca ctggccttgc ctccaggacc
2101 ttgcttcctt ctcatcttgc ctcattttgc ttcccatctg aagagtggaa atggggaact
2161 cccccagagg tggatactgg ggggcaggcc tcccaagctg atggacatga gagtagggcc
2221 ctgacaggcc ttcctcctct caaacctggc agatgggggc ctctctggaa gagggagggg
2281 ccctgtcact gtccagagtc tctttttaca cttcacctcc ttctgcagtc agactgaaat
2341 ataaaaaagg tggtggtggt ggtgaagggg ctggtggaga tgtaggaacc gatctgctat
2401 ttttaatttc ctgtgaggat agagacttgc agttagactc aaagaagtac tgtactttcc
2461 caggttgact aagaaatgcc agtggtggag gtgggtgttt gggaaaggca gggccctgaa
2521 atggcctgtc cctagggctc tccaagcact agccttccca gcttcccgcc gcccccccca
2581 tctcttcctg tctaacttgg ggaaggggcc tgggctgtga ggacagggcc cccacagggg
2641 atggtttcac gagtgtagtc ccggaggcct tccctttaca gctctcctcc agccctgggc
2701 acatagcata ggctggggac acaggatcct ggcctgagaa ttgaggggag gtggccagcc
2761 cgcagaggtg gggtgctggg gctgcatgat ttttgccctg cgtcccttct ctttggggct
2821 cctttcccct ctcatacata aaatcgcttt caaattaaaa aaaaaaaaaa aaaaa
//